Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F22
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    28   1.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.2  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.2  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.2  

>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 159 ILYFLHAYRVSSQSDAWFSSY-----NRTSVKTTVDLYISIDNISIFELITKIYEHQSPF 323
           +L FLH    SS +      +     N T   + + + + IDNISI  ++TK  + ++ F
Sbjct: 294 LLSFLHKLIASSNAPKSLEIFLQELNNNTKSNSNMKVLLVIDNISILSVVTKYKDKKNNF 353


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 482  IVNRISFKSLPTYGKRCLQLIIFNYIKQKFSYKI 583
            I+N + F  +PT  K+ L++ + N+I      K+
Sbjct: 1179 ILNFLKFSGIPTQSKKRLEVHMLNFISSTLYLKV 1212


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +3

Query: 171 LHAYRVSSQSDAWFSSYNRTSVKTTVDLYISIDNISIFELITKIYEHQS 317
           LH    +     W++++    VK   D Y  ++N S F ++  +  H +
Sbjct: 480 LHVQTTNESVIKWYTAHGFKIVKQINDFYRRLENKSAFYMVCPLSAHNN 528


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 385 YEHYKSFIFGLITSFLQI*STTSFITLFVIHFYRKQNLIQIITHVW 522
           ++H ++ +F  + S LQI S ++ ++ F + F  ++N  + + H W
Sbjct: 377 FQHKEAVLFEQVQSLLQILSDSAAVSCF-LEFMERKNRSRYL-HFW 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,994
Number of Sequences: 5004
Number of extensions: 58898
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)