Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F22
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   4.1  
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304...    29   4.1  
11_04_0102 - 13491071-13491415,13491427-13491720,13491799-13492323     28   7.2  

>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 108 WCGESNAHINISLSVKYILYF--LHAYRVSSQSDAWF-SSYNRTSVKTTVDLYISIDNIS 278
           W  E+N +++  LSVK+  +   L      +Q+ +W  +SYNR S    VD+ I+  N+S
Sbjct: 338 WLLENNIYLSY-LSVKHNSFVGSLILPSTVNQNLSWLDASYNRLSGDLPVDINITFPNLS 396

Query: 279 IFELITKIYE 308
              L    ++
Sbjct: 397 YLNLSKNFFQ 406


>06_01_0424 +
           3041296-3041860,3042701-3042786,3042858-3043147,
           3043225-3043285,3043773-3043868,3044448-3044603,
           3044811-3044987
          Length = 476

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 497 SFKSLPTYGKRCLQLIIFNYIKQKFSYKIITRTESN 604
           + K  P Y K CLQL++FN+    F   +IT+  S+
Sbjct: 208 AIKRNPRYPKICLQLLLFNFGIHLFMTDMITQNFSD 243


>11_04_0102 - 13491071-13491415,13491427-13491720,13491799-13492323
          Length = 387

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 AYPLSTYYIFYMHTEFQVNRMHGSVVITEHP*KP 243
           AY L+   + Y H+E  + R HG    +E   +P
Sbjct: 335 AYKLNDSRVIYRHSEVPIRRSHGKTAASEEAHQP 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,673
Number of Sequences: 37544
Number of extensions: 293886
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)