Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F18
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   138   9e-34
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    29   0.85 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.85 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   4.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   4.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   7.9  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  138 bits (334), Expect = 9e-34
 Identities = 65/104 (62%), Positives = 81/104 (77%)
 Frame = -3

Query: 331 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 152
           R+A YN KKA KP  + KS + LDVKPWDDET M  LE+AVRSI  DGL+WG +KLVP+ 
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170

Query: 151 YGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAAFNKV 20
           +G++K QI+ VVEDDKVS++ L EE+E  EDYVQS DIAA +K+
Sbjct: 171 FGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 847 VFKYNSNXNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKV 716
           + + N+N   G+IS A  L   V+L++ ++N    A  E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 595 TELSTKVISLENENKDLKKAIDDLRN 518
           T+  +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 598 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 494
           NT+LS K+   ENE +DL +    L++ ++ L+ R
Sbjct: 36  NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEAR 70


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 254 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 358
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 631 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 479
           M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 667 KARQHIKNSLECMDSVATLAGVPNTELSTKVIS 569
           K  Q +  ++ C+D++ +L  V N E+   VIS
Sbjct: 63  KFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVIS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,183
Number of Sequences: 5004
Number of extensions: 55803
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)