Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_F18
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 118 8e-27
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 118 8e-27
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 114 1e-25
08_01_0778 + 7548307-7549220,7551682-7552021 29 3.6
06_03_0860 + 25484826-25485758,25486155-25486406 29 3.6
07_01_0243 - 1783903-1784658 29 4.8
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 29 4.8
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 29 4.8
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 6.3
04_04_1097 - 30859963-30860302,30862130-30863058 29 6.3
01_06_1261 - 35826513-35828941,35829201-35829294 29 6.3
07_03_1086 + 23858419-23859423,23859527-23859610 28 8.3
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 118 bits (283), Expect = 8e-27
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Frame = -3
Query: 331 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 152
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 151 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 20
YGI KLQI + DD VS+D L E+ E +Y+QS DI AFNK+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 118 bits (283), Expect = 8e-27
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = -3
Query: 331 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 152
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 151 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 20
YGI KLQI + DD VS+D L E+ E +++QS DI AFNK+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 114 bits (274), Expect = 1e-25
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Frame = -3
Query: 313 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 134
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 133 QISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 20
QI + DD VS+D L EE E ++VQS DI AFNK+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>08_01_0778 + 7548307-7549220,7551682-7552021
Length = 417
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 208 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 35
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 261 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKVDVY 320
Query: 34 AFNKV 20
+F V
Sbjct: 321 SFGIV 325
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -3
Query: 208 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 35
R + + LL V +A +G L+ +C + +K + W+ E+ K + Y + VD+
Sbjct: 221 RDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVY 280
Query: 34 AFNKV 20
+F V
Sbjct: 281 SFGIV 285
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -1
Query: 507 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 388
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -3
Query: 208 RSISTDGLLW-GAAKLVPLAYGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 35
R + + +L+ G + +G+ ++ C +EDD + W+ E+ K + Y + VD+
Sbjct: 420 RDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVY 479
Query: 34 AFNKV 20
+F V
Sbjct: 480 SFGLV 484
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -3
Query: 673 VAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 494
+A AR ++ E A L TEL + L+ +N++ + AI D+ L+I + R
Sbjct: 305 IATARDSLRQREEAKKKQAEL-----TELENEATELKQKNEEERVAIQDMEALLIKRRRR 359
Query: 493 VE 488
VE
Sbjct: 360 VE 361
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 658 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 518
+ ++ ++ M++ A + + ++ L NEN+ LK IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 208 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 35
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 266 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDQKVDVY 325
Query: 34 AFNKV 20
+F V
Sbjct: 326 SFGIV 330
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = -3
Query: 667 KARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 488
K +Q ++S E S LAG + E+ KVISLE I+ ++N LQ R++
Sbjct: 311 KVKQKFESSSEA--SAVHLAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLD 367
Query: 487 TLE 479
+LE
Sbjct: 368 SLE 370
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 154 AYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAA 32
A GIH+L +SC E +I L E+E + S+ AA
Sbjct: 44 AAGIHRLLLSCAAEASDGTISSLVAELESPSSSLDSLRRAA 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,800,053
Number of Sequences: 37544
Number of extensions: 330667
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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