Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F11
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1609 - 28213071-28213796                                         28   8.5  
06_01_0326 + 2372176-2373057,2373146-2373610                           28   8.5  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    28   8.5  

>08_02_1609 - 28213071-28213796
          Length = 241

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 671 AGVVRALTVTWTLDSCELYKLSAWHTYTPLSPTVTRRIVRRETLXPLIHMLSPDAILTPS 850
           +GV + +  +++LDSC LY     H +  LS + TR   RRE    ++    P   L  S
Sbjct: 164 SGVHQPMRRSFSLDSCHLYLAIILHPH-QLSDSDTRSRSRREPKPAVLESERPSRTLRRS 222

Query: 851 LDQYT 865
              ++
Sbjct: 223 FFSFS 227


>06_01_0326 + 2372176-2373057,2373146-2373610
          Length = 448

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -1

Query: 849 DGVRIASGDNIWISGXSVSRLTIRRVTVGDSGVYVCHADNLYSSHE 712
           DG+ +    NIWI   S+S  +   + + D    +  +++ ++ H+
Sbjct: 248 DGISVMGSSNIWIDHVSMSNCSDGLIDITDGSTAITISNSHFTKHD 293


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 375 EAIGRGDDLTILRKIINTKIILL*PMVV 458
           EA+G  D+ T+L K++ TK+  + P+ V
Sbjct: 669 EAVGAEDEDTVLTKVVRTKVFEMPPLSV 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,645
Number of Sequences: 37544
Number of extensions: 362085
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)