Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F06
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0382 + 17470508-17470807,17471449-17474517                       28   7.4  
01_06_0894 - 32781957-32782287,32783019-32783284,32783771-327840...    28   7.4  
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238...    27   9.7  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     27   9.7  

>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 133 WAAADYPSQTRFCVSVCKYQGCSPHG*K 216
           +A+ D PS  +FC+  C    C P G K
Sbjct: 848 FASGDMPSLVKFCLESCPKLKCLPEGLK 875


>01_06_0894 -
           32781957-32782287,32783019-32783284,32783771-32784040,
           32785007-32785134,32785284-32785893
          Length = 534

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 355 SSLYSPRSTVLLVMLHHYLGIIHC 284
           SS +SP++ V L  L H+ G+++C
Sbjct: 296 SSFFSPQNPVKLSSLKHHSGVLYC 319


>12_02_1083 -
           25922670-25922867,25922962-25923213,25923674-25923856,
           25923945-25924015,25924058-25924169,25924524-25924583,
           25924665-25924780,25925172-25925244
          Length = 354

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 483 N*LQNFDD*IKLLLNKNHFQFNKVRSNNSTKVL*HPRFVPILT 355
           N L NF   + L L+ N+  ++ + SNN TKV   P+   + T
Sbjct: 253 NTLANFVSEVSLTLHDNNTAYSLLISNNGTKVFLFPQVKNLAT 295


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 RFCVSVCKYQGCSPH 207
           RFC   CK  GCSPH
Sbjct: 167 RFCSLGCKVVGCSPH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,084
Number of Sequences: 37544
Number of extensions: 220483
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)