Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_F05
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 54 4e-09
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 45 2e-06
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 27 0.62
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 3.3
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 3.3
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 3.3
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 3.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 24 4.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 24 4.4
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 24 5.8
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 24 5.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 5.8
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 7.7
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 54.4 bits (125), Expect = 4e-09
Identities = 27/41 (65%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Frame = -2
Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCXK 104
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RC K
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSK 41
Score = 41.5 bits (93), Expect = 3e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = -3
Query: 183 RRGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPP 37
RR T R K + T + + ++LYTLV+ D +KAEKL+QSLPP
Sbjct: 16 RRKDATSARIK-KNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPP 63
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 45.2 bits (102), Expect = 2e-06
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -2
Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCXK 104
MPR++ DIK FL A R DA S ++KKN VKFK+RC +
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSR 41
Score = 42.3 bits (95), Expect = 2e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -3
Query: 180 RGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPP 37
RG T R K + + + R+LYTLV+ D +KAEKL+QSLPP
Sbjct: 17 RGDATSARVK-KNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPP 63
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 27.1 bits (57), Expect = 0.62
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 230 DE*FSTSTVKGSKRNTKVIGRPNSF 304
D+ ST G+K NT V G+P++F
Sbjct: 500 DKGLSTDASSGAKSNTPVFGQPSTF 524
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 240 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 115
N ST + + ++K+F R +TP ++K R +L+ S F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 140 VLLYFDRFGVFPPRLN*KVFDIFD 211
VLLY RF V P+L +F FD
Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFD 121
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 144 RTLRMSSSRFDAXR-FLYTLVITDKEKAEKLKQSLPPGSKLKK*SD 10
+T R++ S D F Y + ++E+ EK SL ++KK SD
Sbjct: 537 KTKRITLSNMDLETDFAYKTPVEEEEEEEKSAGSLSIKQRMKKLSD 582
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 126 SSRFDAXRFLYTLV--ITDKEKAEKLKQSLPPGSKL 25
S D F+ TL+ I E A L +PPG+KL
Sbjct: 705 SYSLDKPEFICTLLENIGTDENARNLLSKIPPGTKL 740
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 279 FVFLLDPLTVLVENYSSSTCRVKSKISKTF*LRRGGKTPNRS 154
++F L P+ VL+ ++ S C + S F +PNRS
Sbjct: 179 YIFTLFPIRVLISFFTLSRCIFQGLFSTFF---HRNSSPNRS 217
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -2
Query: 229 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXKVPVH 92
FN+ R +DI +F +++R + A +KN E + V+ ++P++
Sbjct: 252 FNLERICQDIGNFDVRSRIERAARQAREKN-EKLLQNVKTSEIPIN 296
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 116 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 226
N+ + R L +F VF L+ FD+ D+ +HV
Sbjct: 14 NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 72 EKAEKLKQSLPPGSKLKK*SD 10
E+ ++LK+SLPPG + + D
Sbjct: 85 EELDELKKSLPPGQAIVRRDD 105
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 208 KDIKDFLIKARRKDAKSVKIKKNPEN 131
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 217 REIKDIKDFLIKARRKD 167
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,180
Number of Sequences: 5004
Number of extensions: 19059
Number of successful extensions: 57
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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