Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_F05
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528 60 3e-10
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471 60 4e-10
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 58 1e-09
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 27 3.8
08_02_1440 - 27113396-27113418,27113976-27114102 26 5.1
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 26 5.1
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 25 8.9
04_04_0284 + 24133397-24133483,24133843-24133979,24134311-241345... 25 8.9
>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
Length = 69
Score = 60.5 bits (140), Expect = 3e-10
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = -2
Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXK 104
MP++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRC K
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSK 40
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 198 KTF*LRRGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPPG 34
K F L K + +RT + ++LYTL + D +KA KLKQSLPPG
Sbjct: 9 KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPG 63
>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
Length = 69
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/40 (62%), Positives = 35/40 (87%)
Frame = -2
Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXK 104
MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRC +
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSR 40
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -3
Query: 105 RFLYTLVITDKEKAEKLKQSLPPG 34
R+LYTL + D +KA KLKQSLPPG
Sbjct: 40 RYLYTLCVHDTDKANKLKQSLPPG 63
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = -2
Query: 220 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXK 104
P++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRC K
Sbjct: 32 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSK 70
Score = 43.2 bits (97), Expect = 4e-05
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -3
Query: 267 LDPLTVLVENYSSSTCRVKSKIS-KTF*LRRGGKTPNRSK*RRTLRMSSSRFDAXRFLYT 91
+DP+ VLV ++ + K K F L K + +RT + ++LYT
Sbjct: 15 IDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT 74
Query: 90 LVITDKEKAEKLKQSLPPG 34
L + D +KA KLKQSLPPG
Sbjct: 75 LCVFDADKANKLKQSLPPG 93
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 270 LLDPLTVLVENYSSSTCRVKSKISKTF 190
+LD L V++EN SS+T +S I+ T+
Sbjct: 395 ILDALAVVLENISSTTPVARSTIAATY 421
>08_02_1440 - 27113396-27113418,27113976-27114102
Length = 49
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 72 EKAEKLKQSLPPGSK 28
E A KLKQ LPPGS+
Sbjct: 25 ENANKLKQFLPPGSQ 39
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 280 FCVSFGPFDSAG*KLFVFNMPREIKDIK 197
FC F G LF++ P E+KD+K
Sbjct: 13 FCFGFSAGIVIGYFLFIYFQPTEVKDVK 40
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = -3
Query: 234 SSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKL 55
++ TC++ S T R G +K + R++ R A +DK + L
Sbjct: 222 TNHTCKINSTCKTTTFKTRSGPNQGNTKVKEMARVNKERKPAPLLSRAEKRSDKYRRLPL 281
Query: 54 KQSLPP 37
Q +PP
Sbjct: 282 DQLVPP 287
>04_04_0284 +
24133397-24133483,24133843-24133979,24134311-24134599,
24134723-24134829,24134905-24135052,24135260-24135458,
24135545-24135785,24135888-24135984,24136413-24136492,
24136533-24136551
Length = 467
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = -2
Query: 211 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXKVP 98
++D+KD L + ++++ P+N +++R +P
Sbjct: 43 VRDVKDLLFHSYFSIMDDLRLQAPPDNKPYEIRLLDIP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,263,117
Number of Sequences: 37544
Number of extensions: 114093
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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