Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F05
         (305 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      71   9e-13
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    71   9e-13
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    53   1e-07
Z99916-3|CAI17930.1| 1806|Homo sapiens protein ( Human DNA seque...    29   3.5  
AL022323-1|CAI17936.1| 1806|Homo sapiens protein ( Human DNA seq...    29   3.5  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -2

Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXK 104
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRC +
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSR 40



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = -3

Query: 105 RFLYTLVITDKEKAEKLKQSLPPGSKLKK 19
           R+LYTLVITDKEKAEKLKQSLPPG  +K+
Sbjct: 40  RYLYTLVITDKEKAEKLKQSLPPGLAVKE 68


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -2

Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCXK 104
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRC +
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSR 40



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = -3

Query: 105 RFLYTLVITDKEKAEKLKQSLPPGSKLKK 19
           R+LYTLVITDKEKAEKLKQSLPPG  +K+
Sbjct: 40  RYLYTLVITDKEKAEKLKQSLPPGLAVKE 68


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = -3

Query: 105 RFLYTLVITDKEKAEKLKQSLPPGSKLKK 19
           R+LYTLVITDKEKAEKLKQSLPPG  +K+
Sbjct: 7   RYLYTLVITDKEKAEKLKQSLPPGLAVKE 35


>Z99916-3|CAI17930.1| 1806|Homo sapiens protein ( Human DNA sequence
           from clone CTA-221G9 on chromosome 22q11.21-12.2.riant
           1.  ).
          Length = 1806

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 179 EEERRQIGQNKEEP*ECQVQGSMLQGSCTPWSSLTKRRLRNLSR 48
           E+     G+  +EP E Q +G  L G+C P S      LR+ SR
Sbjct: 527 EKSAELSGEFPKEPREKQKEGHSLDGACIPRSPWKPGTLRDKSR 570


>AL022323-1|CAI17936.1| 1806|Homo sapiens protein ( Human DNA
           sequence from clone CTA-243E7 on chromosome 22q12.1. ).
          Length = 1806

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 179 EEERRQIGQNKEEP*ECQVQGSMLQGSCTPWSSLTKRRLRNLSR 48
           E+     G+  +EP E Q +G  L G+C P S      LR+ SR
Sbjct: 527 EKSAELSGEFPKEPREKQKEGHSLDGACIPRSPWKPGTLRDKSR 570


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,628,702
Number of Sequences: 237096
Number of extensions: 631211
Number of successful extensions: 1454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)