Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F05
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    72   7e-14
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    25   7.9  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    25   7.9  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    25   7.9  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = -2

Query: 223 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRC 110
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRC 38



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 24/60 (40%), Positives = 36/60 (60%)
 Frame = -3

Query: 198 KTF*LRRGGKTPNRSK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPPGSKLKK 19
           K F ++   K     K ++    +  +     +LYTLV+ DK+KAEKLKQSLPPG ++K+
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKE 68


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 184  KARRKDAKSVKIKK--NPENVKFKVRCXKVPVHPGH 83
            K  R+D  +VKI++    E V FK RC   P  PG+
Sbjct: 1112 KPNREDCYTVKIEELTAEEYVAFKKRCLSAPETPGN 1147


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 156 SK*RRTLRMSSSRFDAXRFLYTLVITDKEKAEKLKQSLPPGSKLKK 19
           SK RR+ R+ +S      F+Y   +TD+ + +K   SLP    + K
Sbjct: 747 SKQRRSSRLKNSTAKTADFVYEPAVTDRSEQDK-SPSLPREKNIGK 791


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 229 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 122
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 229 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 122
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 229 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 122
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 232 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRC 110
           +++MP  IK  ++FL+ +  K  K  +K+ K  +    K  C
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASC 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,402,235
Number of Sequences: 27780
Number of extensions: 106301
Number of successful extensions: 303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)