Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F05
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.9  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 93  CTGTLXHRTLNLTFSGFFFILT 158
           CT T     + L FSG F + +
Sbjct: 49  CTDTFMEGVIVLAFSGLFSVFS 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 209 DFTRHVEDE*FSTSTVKGSKRNTKVI 286
           DF  H   E     T+KG  R+ +VI
Sbjct: 189 DFVIHRSPELVPMPTLKGDGRHMEVI 214


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 99   LYTLVITDKEKAEKLKQSLP 40
            LYT V+  +E+    K++LP
Sbjct: 1249 LYTRVVDGREELNHGKRTLP 1268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 99   LYTLVITDKEKAEKLKQSLP 40
            LYT V+  +E+    K++LP
Sbjct: 1245 LYTRVVDGREELNHGKRTLP 1264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,218
Number of Sequences: 438
Number of extensions: 1152
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)