Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_F04
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 32 0.38
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 32 0.38
03_01_0378 + 2943605-2943690,2943774-2943920,2944607-2944675,294... 30 1.5
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 30 2.0
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 29 2.7
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844... 29 4.7
11_01_0422 + 3246528-3248606 28 8.2
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 28 8.2
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584... 28 8.2
02_01_0078 - 549625-549766,549961-550490,550592-550744,551036-55... 28 8.2
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229 28 8.2
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -3
Query: 508 FAMPLGIIGITSTNLVLILKHQKNGLQQLKNME*L*RSILPILKIWAMVIIRSYLILVRT 329
F +PL ++G+ + LVL L Q+NG + L ++ L + +L +M SY + +
Sbjct: 128 FGIPLPLLGLVAYGLVLTLSLQENGKKFLPGIDDLDIRLTLLLISTSMATASSYFLYILN 187
Query: 328 PRIL 317
R +
Sbjct: 188 TRFI 191
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 383 PEDMGYGDYPKLPDIGED 330
PED G G+ P++PD+GED
Sbjct: 62 PEDAGEGEQPRVPDLGED 79
>03_01_0378 +
2943605-2943690,2943774-2943920,2944607-2944675,
2944758-2944923,2945000-2945228,2945335-2945888
Length = 416
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 506 CNATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYP 381
CN T +W + + P P K ++ +AA K++ +T T P
Sbjct: 216 CNDTDVYWFFTWSPSPDDKDVDKSSAATKQFVLTKLRSTNVP 257
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 524 KTAALFCNATRNHWNYQYQPGPYPKTPEERAAAAKKY 414
++ L C+ T +WNY + P P EE A + Y
Sbjct: 208 RSGVLPCSDTSVYWNYTWYPSPDDGDAEESVAKMRSY 244
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = -2
Query: 461 PYPKTPEERAAAAKKYGMTVEEYTPYPE------DMGYGDYPKLPDIGEDSKDPHYPYDN 300
PYP + + + + G VE YT YP ++ YG Y LP HY +N
Sbjct: 165 PYPV--KVQTLSIRLPGGRVESYTKYPNTKLAESELKYGPYEDLPPFSYSPMVVHYENNN 222
Query: 299 P 297
P
Sbjct: 223 P 223
>10_05_0036 +
8443957-8444112,8446063-8446129,8446685-8446743,
8446855-8446930,8447118-8447189,8447326-8447413,
8447489-8447744,8447934-8448049,8448247-8448470,
8448685-8448716,8448882-8449018,8449200-8449289,
8449383-8449557
Length = 515
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -2
Query: 278 NEPLHATAEIFGGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFLEDYK 126
N+ L A+ D CD+ +SLL W W G F L V DYK
Sbjct: 447 NDYLTNLADSIREDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYYV---DYK 494
>11_01_0422 + 3246528-3248606
Length = 692
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -1
Query: 594 YVSKCKDVFVTEK-----SSVQQLSIHKKNGSSVLQCH*ESLELPVPTW 463
Y+++C VF+ + +S+Q L K + V++ ESLE V TW
Sbjct: 261 YMTECTQVFLVARRNALDASLQNLGYEKASIDDVVRMAWESLESDVATW 309
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 179 KTKSIDAAVKIFALC*CHSDLHQIFLQ*RATVH 277
KT D A+K+ CHSDLH I + R V+
Sbjct: 44 KTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVY 76
>03_02_0139 -
5844107-5844278,5844413-5844521,5844630-5844732,
5844834-5844865,5845211-5845434,5845774-5845889,
5845997-5846252,5846720-5846807,5846891-5846962,
5847096-5847171,5847302-5847360,5848202-5848268,
5848760-5848825,5850466-5850657
Length = 543
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -2
Query: 305 DNPELKRNFNEPLHATAEIFGGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFLED 132
D+ +K + N+ L A D CD+ +SLL W W G F L V +D
Sbjct: 468 DSKRIKYH-NDYLTNLAASIKEDGCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYKD 524
>02_01_0078 -
549625-549766,549961-550490,550592-550744,551036-551182
Length = 323
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 461 PYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGEDS 327
P P P AA + + + PY M Y +Y P++ ED+
Sbjct: 10 PAPPPPPAAAATDEPWITDTLPFVPYDNSMSYTNYCYYPEMFEDA 54
>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
Length = 265
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 455 PKTPEERAAAAKKYGMTVEEYTPYPEDMGYGD---YPKLPDIGEDSKDPHYPYDNPELKR 285
P TP E AAA++ EE Y +MGY +LPD+ SK+P + ++
Sbjct: 71 PVTPSESPAAARRREEDEEERRRYYLNMGYAIRTLREELPDV--FSKEPSFDIYRDDIV- 127
Query: 284 NFNEPLH 264
F +PL+
Sbjct: 128 -FKDPLN 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,563
Number of Sequences: 37544
Number of extensions: 389124
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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