Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F01
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   5.3  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   9.3  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   9.3  

>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 665 LVIKMTERCGLKVGQVCTQHIQ 730
           + +KM +RCG K GQ   QH Q
Sbjct: 255 VALKMLQRCGWKEGQGLGQHNQ 276


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 RFTVPS*ILKYVWHXLXVTIXFFF 331
           ++TV S ++ ++W    +TI FFF
Sbjct: 258 QYTVASWVMLFMWFFYMLTIIFFF 281


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 691 WPQGWASLHST 723
           WPQ WAS H+T
Sbjct: 156 WPQQWASYHAT 166


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 159 FINKHTNLLHIKNNAN*FFXHWL 91
           +   HTNLLH+  N      HW+
Sbjct: 303 YFEPHTNLLHVPLNTQPTKTHWI 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,951
Number of Sequences: 5004
Number of extensions: 63301
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)