Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_F01
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical...    29   2.9  
U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +1

Query: 22  LSYFHLI*SLIPAXVRNNKLQSLKPMXKKLISIIFYMEQIS 144
           LS+F    S IP   RNNKL SL    + L S++FY+++++
Sbjct: 366 LSFFAECSSFIPQLPRNNKL-SLHWKSQNLKSMVFYLQRVT 405


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 230 TKEIIHLPIFRFTVPS*ILKYVWHXLXVTIXFFFXLKAGFLICIIY 367
           T+E  +  +F +T+    + Y+W    V +   F     F IC IY
Sbjct: 191 TEEFFYSDVFVWTIDKFWINYLWMSTGVIVLMLFSQLGFFTICCIY 236


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 230 TKEIIHLPIFRFTVPS*ILKYVWHXLXVTIXFFFXLKAGFLICIIY 367
           T+E  +  +F +T+    + Y+W    V +   F     F IC IY
Sbjct: 155 TEEFFYSDVFVWTIDKFWINYLWMSTGVIVLMLFSQLGFFTICCIY 200


>AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical
           protein Y102A5C.29 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 112 LIFLXLALVTVICCFEXKRESTIKLNENSLNFNKYHH 2
           +  L L L   I CF  +  +  ++NENS +  KY H
Sbjct: 99  IFLLCLVLPASITCFIYRHNAASQINENSNSSTKYSH 135


>U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical
           protein AH9.1 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/70 (20%), Positives = 35/70 (50%)
 Frame = +2

Query: 56  PLXFETTNYSH*SQX*KN*LALFFIWSKLVCLLIKV*RERLGISTSITFEKYLYSLIKTK 235
           P+ F   N +  S+     + +   +  L+     V +++LG+ T     K +Y++++ +
Sbjct: 161 PIKFFQNNETKPSRRRTMLIIVMIYFIALMIYFPSVFQKKLGVVTDALTNKTIYTIVRNE 220

Query: 236 EIIHLPIFRF 265
           ++  L +F+F
Sbjct: 221 DVEALQVFKF 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,533
Number of Sequences: 27780
Number of extensions: 341022
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)