Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_E24
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 30 0.42
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.98
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 27 2.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 3.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 3.9
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 26 6.9
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 6.9
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 6.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 9.1
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 29.9 bits (64), Expect = 0.42
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 611 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEV 432
+K+RLE E ++ + R ++ + RKK + E + ++L+E + E
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
Query: 431 LQRRQKQ 411
QRR KQ
Sbjct: 164 EQRRLKQ 170
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.98
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -2
Query: 611 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVV---KLVEYETD 441
K RR + +E ED++ +KS N + + ED+KN + + N VV KL++ +T
Sbjct: 21 KNRRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79
Query: 440 PEVLQ 426
+Q
Sbjct: 80 LSSIQ 84
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 557 KSMNSRTHSGEDSKNRK--KLKSDVENEGNLVVKLVEYETD 441
K +NS + E+S ++ KSD E E ++ K EY+ D
Sbjct: 87 KELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDED 127
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 638 LCETMASCYKKRRLEH-EESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVK 462
+CET C+ RR +S I T+K+ N R HS S ++ +
Sbjct: 1 MCETPIGCHTPRRCNRFIDSAALIDCTNKT-NQREHSPSFS-----IEIPTTPSRKRTLA 54
Query: 461 LVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTP 321
++T + ++ ++ K + Y N+ Q+ NK+ K LP TP
Sbjct: 55 SSHFQTPTKRIKYELGELQEEKTDL-YPNFPAQLKENKKPK-LPTTP 99
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -2
Query: 449 ETDPEVLQR----RQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDM 282
E DPE L+ R+ + +T+G ++YV R+K+ P+ K+ K + S
Sbjct: 20 ERDPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSKQAPQLDPKF-KGRKTSRQE 78
Query: 281 LIKLWRKNLHEFDPNFGEVKKEC-NDA 204
L+ N P+ E +E NDA
Sbjct: 79 LLNSGSLNSQSSSPSEEEDSEEDENDA 105
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 81 NDITDHTTTSQLVRYW*ITFVI 16
ND T TTTS+ R+W F++
Sbjct: 3 NDYTTSTTTSRRPRFWGFFFIL 24
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = -2
Query: 350 KRTKELPKTPDKYLKYSRRSWDMLIKLWRKNLHEFDPNFGEVKKECNDANKKVN 189
K+ +E K K + + W + WRK++ E+ + E +K ++ K +
Sbjct: 166 KKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTD 219
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 602 RLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNL 471
RL+H +S+ + D+ N+ S + +N KK S++EN GN+
Sbjct: 78 RLKHTQSD----LIDRFKNANLKSVNE-ENLKKFFSELENHGNI 116
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 587 ESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQI 408
+SE+ + V ++ R S +D + DVE + + ++V + E+L ++
Sbjct: 675 KSEENVIVQLGKVSYRPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEF 734
Query: 407 D----YGKNTVG 384
D Y KN +G
Sbjct: 735 DFPAQYSKNVIG 746
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 611 KKRRLEHEESED-KITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETD 441
KK + E + S KI + + + + + K D E++ LVVK E ET+
Sbjct: 172 KKHKAERKRSPSPKIEILEDDEEIEDVASDKDEEEKPWSGDEEDDDELVVKDSEDETE 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,368
Number of Sequences: 5004
Number of extensions: 57865
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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