Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E23
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   188   5e-49
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   188   5e-49
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    35   0.009
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   5.4  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   7.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   7.1  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  188 bits (458), Expect = 5e-49
 Identities = 87/145 (60%), Positives = 112/145 (77%)
 Frame = -2

Query: 463 LSSKMADQTEKAFQKQATVFLXRXGGMKRKDMRHHKNVGLGFXTPREAIEGTYIDKKCPF 284
           +++++  Q+E+AFQKQ  +F     G  R   R +K+VGLGF TP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 283 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRXMSVHLSPCFRDVEI 104
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+ ++ H+SP FR +  
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116

Query: 103 GDIVTIGECRPLSKTVRFNVLKVSK 29
           GD+VT+G+CRPLSKTVRFNVL+V K
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRVVK 141


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  188 bits (458), Expect = 5e-49
 Identities = 87/145 (60%), Positives = 112/145 (77%)
 Frame = -2

Query: 463 LSSKMADQTEKAFQKQATVFLXRXGGMKRKDMRHHKNVGLGFXTPREAIEGTYIDKKCPF 284
           +++++  Q+E+AFQKQ  +F     G  R   R +K+VGLGF TP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 283 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRXMSVHLSPCFRDVEI 104
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+ ++ H+SP FR +  
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116

Query: 103 GDIVTIGECRPLSKTVRFNVLKVSK 29
           GD+VT+G+CRPLSKTVRFNVL+V K
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRVVK 141


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -2

Query: 247 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRXMSVHLSPCFRDVEIGDIVTIGECRPL 68
           G+V    M +T  +R     + P   ++  +++   V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 67  SKTVRFNVLKV 35
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 241 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRXMSVHLSPCFRDVEIGDIVTI 86
           VQ +   R  V+ RD +  L +YN +   HR +S  L P        DI+++
Sbjct: 314 VQLLSKNRNWVLMRDIVQ-LEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSL 364


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 112 VEIGDIVTIGECRPLSKTVRFNVLKVS 32
           V +GDIVTI  C  +    R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 288 GHFLSM*VPSIASLGVLKPKPTFLW*RMSFLFMPPXLXRKTVACF 422
           G+F+S+ +  IA    +KP+ T LW  +  L  P  L  +T+A F
Sbjct: 175 GNFVSV-LSHIARDEKIKPELTGLWHMVPTLIHPADLDEETMAQF 218


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 RWPVSETLSLSDPPFCLTMKKQFI*IPYSESY 504
           RWP      + + P+ +T+  Q+I I   E+Y
Sbjct: 241 RWPTVPQAVIYNSPYIITLHNQYIYIWNKETY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,429
Number of Sequences: 5004
Number of extensions: 38560
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)