Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_E16
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 33 0.058
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 28 1.3
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.7
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.0
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.7
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 6.7
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 26 6.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.7
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 25 8.8
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 32.7 bits (71), Expect = 0.058
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = -3
Query: 663 VEELTILSQNLHSXXXXXXXXXXXLKDENATLKEKVNYLEKERAKYLN------LGMSSN 502
VEELT+ + HS K E LKEK+ +E ER + ++ L
Sbjct: 246 VEELTVQASQKHSHIAEMESSLQTSKQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQ 305
Query: 501 DLSFNFTSLSISNDISNEVNE 439
++ N T +S S ++ N E
Sbjct: 306 TVNENITRISTSIELKNTALE 326
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 365 YLPSISILTLNQVLLSSNGFKINGLSLTSLEISFDILSE-----VKLKDKSLLDMP 517
Y P ++ L + GF IN LTS++ F ++SE V L + S +DMP
Sbjct: 253 YSPELTSLNFPNLTTVGGGFVINDTGLTSID-GFPVISEIGGGLVLLGNFSSIDMP 307
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 570 LKEKVNYLEKERAKYLNLGMSSNDLSFNF----TSLSISNDISNEVNERPLI 427
L+ +V YLE K N +SSN SF F +N++ N ER +I
Sbjct: 77 LESRVRYLETLLKKNTNFDLSSNSPSFLFFLREQKFQATNELENMSPERKVI 128
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 582 ENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISNDISNEVNER 436
+ L+EK+ +LE+ER+ ++ S FN+ + + + NE+ ER
Sbjct: 957 QTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQD--KNELEER 1003
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 522 NLGMSSNDLSFNFTSLSISNDISNEVNERPLILKPFEDN 406
NL D + TS + ND EV R + PFE N
Sbjct: 52 NLVSRYRDRKLSRTSTLVGNDTLIEVGSRSIARSPFERN 90
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 585 DENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSL 475
D+N +L+++V YLE E K L + N L+ F L
Sbjct: 106 DDNVSLEKRVEYLETENTK---LVKTLNSLNSEFLQL 139
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 570 LKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLS 472
+K K+ YL+ A++ N S+N+ NF L+
Sbjct: 158 IKGKIYYLQAREARFRNTNESTNERVKNFAYLT 190
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 588 KDENATLKEKVNYLEKERAKYLNLGMSSNDLSFNFTSLSISN 463
K+ A+LK ++N+LEKE + + +N+ ++ + IS+
Sbjct: 341 KEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISD 382
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 353 QLFTYLPSISILTLNQVLLSSNGFKINGLSLTSLEISFDI 472
+L YL +IS + LL+ +G+K GL LTSL F++
Sbjct: 188 RLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEM 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,672
Number of Sequences: 5004
Number of extensions: 45316
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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