Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      30   0.33 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 153 DSNLIPVQCDFRK*REFCIFKLLLTVLRLNMLFYVLCLH 37
           DSN++P  C F     F  F  L T L  N  F+ LC H
Sbjct: 101 DSNVVPFFCFFFYFSLFSFFSFLFTSLHFN-FFFRLCRH 138


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 531  VPTLTVFRFLRVLCDVTFASII*TFRTSV 617
            +P LT  R L+VLC    A +  TFRTS+
Sbjct: 1021 LPDLTYHRNLKVLCICNGAWLPATFRTSL 1049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,854
Number of Sequences: 5004
Number of extensions: 47128
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)