Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E14
         (795 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b, sub...   164   4e-40
AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b, sub...   164   4e-40
U87408-1|AAB47568.1|  453|Homo sapiens unknown protein.                30   8.4  
BC103831-1|AAI03832.1|  887|Homo sapiens Bardet-Biedl syndrome 9...    30   8.4  
AF095771-1|AAD25981.1|  802|Homo sapiens PTH-responsive osteosar...    30   8.4  

>BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  164 bits (398), Expect = 4e-40
 Identities = 71/85 (83%), Positives = 79/85 (92%)
 Frame = -3

Query: 769 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 590
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 589 KARVKFNLMERMLQPCGPPPEKPED 515
           KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61  KARVRFNLMEKMLQPCGPPADKPEE 85


>AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  164 bits (398), Expect = 4e-40
 Identities = 71/85 (83%), Positives = 79/85 (92%)
 Frame = -3

Query: 769 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 590
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 589 KARVKFNLMERMLQPCGPPPEKPED 515
           KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61  KARVRFNLMEKMLQPCGPPADKPEE 85


>U87408-1|AAB47568.1|  453|Homo sapiens unknown protein.
          Length = 453

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 763 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVENESK 587
           +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF ++++  +
Sbjct: 163 QRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHFE 220

Query: 586 ARVKFNLMERML 551
            R+    +E +L
Sbjct: 221 LRINGEKLEELL 232


>BC103831-1|AAI03832.1|  887|Homo sapiens Bardet-Biedl syndrome 9
           protein.
          Length = 887

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 763 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVENESK 587
           +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF ++++  +
Sbjct: 597 QRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHFE 654

Query: 586 ARVKFNLMERML 551
            R+    +E +L
Sbjct: 655 LRINGEKLEELL 666


>AF095771-1|AAD25981.1|  802|Homo sapiens PTH-responsive
           osteosarcoma B1 protein protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 763 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVENESK 587
           +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF ++++  +
Sbjct: 512 QRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELIDHHFE 569

Query: 586 ARVKFNLMERML 551
            R+    +E +L
Sbjct: 570 LRINGEKLEELL 581


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,551,513
Number of Sequences: 237096
Number of extensions: 2112258
Number of successful extensions: 2989
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2989
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)