Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E14
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   10.0 

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 631 PDLLSYFAIVENESKARVKFNLM 563
           P+LL YFA +    K + + NL+
Sbjct: 830 PNLLRYFASIATNPKEQAQLNLL 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 651 QESRCWFISHSYFV 692
           +++R W I+HSYF+
Sbjct: 223 EQNRSWRITHSYFM 236


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 58  NLFNNFTFIHNKNGKKNLFNI 120
           N +NN+   +N N KK  +NI
Sbjct: 335 NNYNNYNNNYNNNYKKLYYNI 355


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 67  NNFTFIHNKNGKKNLFNI 120
           NN+ + +N N KK  +NI
Sbjct: 94  NNYKYNYNNNCKKLYYNI 111


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 295 VKCLTILFLYTNLF 254
           + C+ ++FLY N+F
Sbjct: 354 IPCIIMVFLYYNIF 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,138
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)