Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E09
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    31   0.21 
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    29   1.1  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    26   6.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   7.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   7.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   7.9  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 687 FVSNRVVFNP*YSMCQYTTTNHYGATVS 770
           ++ +  +FNP YS+ +Y T ++YG  +S
Sbjct: 367 YILSHAIFNPGYSLFEYATDDNYGLQIS 394


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 857 YWVSNPRIIXANTGTELQSYAPELVHHFQTHGSPIMIGGGVLAHT 723
           YW   P    AN   ++QS     VHH +     I+  GG  + T
Sbjct: 20  YWTEKPDFAIANASVDVQSPTTG-VHHERNRSEDILRTGGATSET 63


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 833 IXANTGTELQSYAPELVHHFQTHGSPIMIGGGVLAHTILGIEYNSI 696
           +  +TG  + +Y P + H+ Q H   ++ GG   A    G++Y+ +
Sbjct: 76  VRLSTGRSVTAYIPGIGHNAQEHAVVLLRGG--RAQDCPGVQYHVV 119


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 241  SICKKIYTAVLHKKHIFLCKNCKGI 167
            S+ K++    +  K + LCK CK +
Sbjct: 958  SVLKRVLDGPMRTKFLLLCKRCKAV 982


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 837 DNFXKYWD*ITKLCPRISPSFSNS 766
           DN  K WD  TK C RI    +N+
Sbjct: 207 DNLIKVWDYQTKACVRILEGHTNN 230


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 356 LLYILLVIACLTTYIKSS 303
           ++YI+L++ C T Y  SS
Sbjct: 197 MIYIILIVTCYTVYCSSS 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,729
Number of Sequences: 5004
Number of extensions: 75981
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)