Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_E08
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical... 313 1e-85
AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical ... 313 1e-85
AB096635-1|BAC76735.1| 417|Caenorhabditis elegans tryptophanyl-... 313 1e-85
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 34 0.10
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 34 0.10
Z71185-10|CAA94908.1| 273|Caenorhabditis elegans Hypothetical p... 29 2.9
U80843-8|AAB37963.1| 250|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 313 bits (768), Expect = 1e-85
Identities = 147/241 (60%), Positives = 186/241 (77%), Gaps = 1/241 (0%)
Frame = -1
Query: 791 GFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIEA 612
GFDP+ TFIFN+ D++ CP FY+N+++I K V NQ + IFGF D +GK FP++EA
Sbjct: 175 GFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVNTNQARAIFGFTPEDCLGKAAFPAVEA 232
Query: 611 APAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQG 435
AP F+++FP IF + + CL+PCAIDQDP+FRMTRDVA RLK KPSLI STFLPAL G
Sbjct: 233 APCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRMTRDVAPRLKASKPSLIFSTFLPALTG 292
Query: 434 AQHKMSASDCNASIFLNDTPKQIKNKINKYAFSGGQITVEEHREKGGNTDVDISYKYLVF 255
AQ KMSAS+ N IFL+DT KQIKNKINKYAFSGGQ TV+EHREKGGN DVDISY++L F
Sbjct: 293 AQTKMSASEPNTCIFLSDTAKQIKNKINKYAFSGGQQTVQEHREKGGNCDVDISYQFLRF 352
Query: 254 FLEDDDKLAEIKKSYESGQMLTGELKKIAIDTITGYVQDYQARRAKVTDEVMHEYFRIRK 75
FL+DD+KLAEI+++Y G+ML+GELK +A + V + Q RR VTDE + E+ ++R
Sbjct: 353 FLDDDEKLAEIRENYTKGEMLSGELKALATQKVQEIVLEMQERRKLVTDETVEEFVKVRP 412
Query: 74 I 72
+
Sbjct: 413 L 413
>AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 313 bits (768), Expect = 1e-85
Identities = 147/241 (60%), Positives = 186/241 (77%), Gaps = 1/241 (0%)
Frame = -1
Query: 791 GFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIEA 612
GFDP+ TFIFN+ D++ CP FY+N+++I K V NQ + IFGF D +GK FP++EA
Sbjct: 175 GFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVNTNQARAIFGFTPEDCLGKAAFPAVEA 232
Query: 611 APAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQG 435
AP F+++FP IF + + CL+PCAIDQDP+FRMTRDVA RLK KPSLI STFLPAL G
Sbjct: 233 APCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRMTRDVAPRLKASKPSLIFSTFLPALTG 292
Query: 434 AQHKMSASDCNASIFLNDTPKQIKNKINKYAFSGGQITVEEHREKGGNTDVDISYKYLVF 255
AQ KMSAS+ N IFL+DT KQIKNKINKYAFSGGQ TV+EHREKGGN DVDISY++L F
Sbjct: 293 AQTKMSASEPNTCIFLSDTAKQIKNKINKYAFSGGQQTVQEHREKGGNCDVDISYQFLRF 352
Query: 254 FLEDDDKLAEIKKSYESGQMLTGELKKIAIDTITGYVQDYQARRAKVTDEVMHEYFRIRK 75
FL+DD+KLAEI+++Y G+ML+GELK +A + V + Q RR VTDE + E+ ++R
Sbjct: 353 FLDDDEKLAEIRENYTKGEMLSGELKALATQKVQEIVLEMQERRKLVTDETVEEFVKVRP 412
Query: 74 I 72
+
Sbjct: 413 L 413
>AB096635-1|BAC76735.1| 417|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (cytosolic)protein.
Length = 417
Score = 313 bits (768), Expect = 1e-85
Identities = 147/241 (60%), Positives = 186/241 (77%), Gaps = 1/241 (0%)
Frame = -1
Query: 791 GFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFPSIEA 612
GFDP+ TFIFN+ D++ CP FY+N+++I K V NQ + IFGF D +GK FP++EA
Sbjct: 175 GFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVNTNQARAIFGFTPEDCLGKAAFPAVEA 232
Query: 611 APAFSTTFPFIF-ENKIVHCLVPCAIDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQG 435
AP F+++FP IF + + CL+PCAIDQDP+FRMTRDVA RLK KPSLI STFLPAL G
Sbjct: 233 APCFASSFPQIFGKRNDIPCLIPCAIDQDPFFRMTRDVAPRLKASKPSLIFSTFLPALTG 292
Query: 434 AQHKMSASDCNASIFLNDTPKQIKNKINKYAFSGGQITVEEHREKGGNTDVDISYKYLVF 255
AQ KMSAS+ N IFL+DT KQIKNKINKYAFSGGQ TV+EHREKGGN DVDISY++L F
Sbjct: 293 AQTKMSASEPNTCIFLSDTAKQIKNKINKYAFSGGQQTVQEHREKGGNCDVDISYQFLRF 352
Query: 254 FLEDDDKLAEIKKSYESGQMLTGELKKIAIDTITGYVQDYQARRAKVTDEVMHEYFRIRK 75
FL+DD+KLAEI+++Y G+ML+GELK +A + V + Q RR VTDE + E+ ++R
Sbjct: 353 FLDDDEKLAEIRENYTKGEMLSGELKALATQKVQEIVLEMQERRKLVTDETVEEFVKVRP 412
Query: 74 I 72
+
Sbjct: 413 L 413
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = -1
Query: 539 IDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQGAQHKMSASDCNASIFLNDTPKQIKN 360
+DQ F + + +LKL K + + +P L G KMS+S+ ++ I + D P+++++
Sbjct: 197 VDQRKIFILAEEQLPKLKLGKRWHLMNPMVPGLTGT--KMSSSEEDSKIDVLDEPEKVRS 254
Query: 359 KINKYAFSGGQ 327
KI A S Q
Sbjct: 255 KIMGAACSRDQ 265
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = -1
Query: 539 IDQDPYFRMTRDVAVRLKLPKPSLIHSTFLPALQGAQHKMSASDCNASIFLNDTPKQIKN 360
+DQ F + + +LKL K + + +P L G KMS+S+ ++ I + D P+++++
Sbjct: 197 VDQRKIFILAEEQLPKLKLGKRWHLMNPMVPGLTGT--KMSSSEEDSKIDVLDEPEKVRS 254
Query: 359 KINKYAFSGGQ 327
KI A S Q
Sbjct: 255 KIMGAACSRDQ 265
>Z71185-10|CAA94908.1| 273|Caenorhabditis elegans Hypothetical
protein C35A5.6a protein.
Length = 273
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 307 LCSSTVI*PPENAYLFILFFICFGVSFKNIEALQSL 414
L S + PP N++ FILF +C VSF++ + L
Sbjct: 3 LKSDVIYHPPHNSW-FILFVVCLLVSFRSFNLIMPL 37
>U80843-8|AAB37963.1| 250|Caenorhabditis elegans Hypothetical
protein C32B5.7 protein.
Length = 250
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 575 ENKIVHCLVPCAIDQDPYFRMT 510
E +I+ CL CAI+ DP MT
Sbjct: 117 EQQIIDCLGGCAIESDPMMAMT 138
>Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical
protein C53A5.10 protein.
Length = 338
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 27 ADNLNATLFFIVLN-VDFPYSEIFVHDLICDLGSSSLIILNVSCN 158
A N +A++ ++++N V+ P+S I +GS+S + + ++ N
Sbjct: 254 AVNFSASMIYVIMNYVEVPFSIILFGQFTWQMGSASPVFIYLTLN 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,500
Number of Sequences: 27780
Number of extensions: 397241
Number of successful extensions: 1160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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