Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_E03
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   143   1e-35
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   140   7e-35
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.068
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   0.83 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   0.83 
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   2.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   3.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   5.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   7.8  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   7.8  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  143 bits (346), Expect = 1e-35
 Identities = 63/127 (49%), Positives = 90/127 (70%), Gaps = 2/127 (1%)
 Frame = -2

Query: 412 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 233
           M KI+KPGKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 232 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 59
           +I +RS++KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FEE
Sbjct: 61  RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120

Query: 58  RYKSGKN 38
           +Y+SGK+
Sbjct: 121 KYQSGKS 127


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  140 bits (340), Expect = 7e-35
 Identities = 61/127 (48%), Positives = 90/127 (70%), Gaps = 2/127 (1%)
 Frame = -2

Query: 412 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 233
           M KI+KPGKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 232 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 59
           +I KRS++KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FEE
Sbjct: 61  RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120

Query: 58  RYKSGKN 38
           +Y++GK+
Sbjct: 121 KYQTGKS 127


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.068
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -2

Query: 421 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 320
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 241 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 107
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 377 QHYFTRLHYFAHLGGIFPLLVD 442
           Q YFT ++ F   G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 406 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 323
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 306 LSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 434
           L E+P + F  T+    AY P   S T+ G      + G  +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 110 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 211
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 336 SRITTKVPPTSHTGMPSSLVSTGT 265
           SR+ T +PP S + +P+  +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 259 KVHKRMGKNKIHKRSKIKPFVKVV 188
           K+ KR+G   I   SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 125 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHP 247
           CAKF   E N  + WH     YNL  R Y   + D +   P
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLP 809


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 154 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 38
           + F       K L DP+ R+K  F ++   + +Y+  KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 154 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 56
           VD++ E+F      DP+     + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +3

Query: 15  TKLLEEHLFFPLLYLSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVGIK*L*FTT 194
           T LL     F LL   S+    L  +F       R+ +LN   L   V +  I  +    
Sbjct: 159 TSLLYRQKKFNLLREESEGFSHLMINFFDALTCLRNKSLNEDYLIVQVNKSIISTIGAFD 218

Query: 195 LTKGFILDLLWILFFPILLCTFRGYLSI 278
           L    +LDL+ +LF   LL ++R +LSI
Sbjct: 219 LDPNKVLDLILLLFSENLLDSWRFFLSI 246


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 211 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 74
           + PF K   Y H + T  +   S  KF   +     K K  R +TR
Sbjct: 39  VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,499
Number of Sequences: 5004
Number of extensions: 41907
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)