Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_D21
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 30 0.27
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 30 0.27
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 29 0.35
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 28 0.81
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 1.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.5
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 3.3
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 3.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 4.3
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 25 5.7
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 25 5.7
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 25 5.7
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 25 7.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 7.5
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 25 7.5
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 7.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 10.0
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 10.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 10.0
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 29.9 bits (64), Expect = 0.27
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 222 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEF 100
+ED +LPA + + S P + T+P +P ++TEF
Sbjct: 646 MEDTRLLPASLELANTQGASNPPTSALPTVPVPLPSIITEF 686
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 380 FLKGGRITEPLLIIQNLPVLTLAKSP-LMMASLCTITLPCKTI 505
+ +GGR+ + + NLPV T+ P L++ TI +P K +
Sbjct: 676 YFEGGRVPSEVYSLDNLPVGTIVNGPSLIVDKTQTIVVPPKAV 718
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 29.5 bits (63), Expect = 0.35
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = -3
Query: 444 NVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKN 265
+V R CII ++I K V + +G + +G N +++A + V IG N
Sbjct: 318 DVVLARSCIIKARTLIGAYTKVGDASVVANTI-IGRNCTIGSNCSIDSAFLWEDVVIGDN 376
Query: 264 VVIGRRCV-----LKDCCMIEDNSVLPAETIV 184
IG+ + + + C IED +++ A ++
Sbjct: 377 CRIGKAILANSVKIGNNCSIEDGAIVAAGVVI 408
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = -3
Query: 339 DHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYS 163
+ V +G+N + A++ + V IG N I ++ +I DN+++ + +F +S
Sbjct: 369 EDVVIGDNCRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKNKRLTTFESHS 427
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 0.81
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 222 IEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFT---KSYYQHFLPT 67
++D S++ TI+ S+++Y G+ L L +P+ M FT KS Y PT
Sbjct: 664 LKDRSIVTKTTIM-SWSKYQGTKESLFQFLSIYIPECMLPFTKLLKSIYSPDCPT 717
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 363 AFFPLQMGDHVFVGENTVVNAAVVGSY 283
A + L+MGD VFV +T VV Y
Sbjct: 288 AIYHLEMGDSVFVAAHTSAGKTVVAEY 314
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 422 QNLPVLTLAKSPLMMASLCTITLPCKTIF*XPQSTVCRLTLL 547
Q + VL+LA L+MAS C ++LP + S V +L+ L
Sbjct: 1039 QMVQVLSLATFTLLMASTCIMSLPNVSASRIATSRVLKLSSL 1080
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -3
Query: 504 IVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQM 343
I+ H + ++ IR V TG +C+ +K F F FPL++
Sbjct: 248 IIFHRETYTRTITEIRASKVRVLTGNYCLHAKSEEEPLEFSYFFHKYFTFPLRL 301
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 327 VGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIED 214
+ +N+ + +++G IGK VV+ +L D ++ED
Sbjct: 378 IKDNSNIKKSIIGKNCVIGKGVVVS-NSILMDNIVVED 414
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 152 AGLPEYLAKEGTIVSAGRTELSSIMQQSLSTHLLPI 259
AG+P L K+ + + G +I Q SLS ++P+
Sbjct: 1041 AGVPTLLIKQENLCNNGSLLFEAIEQNSLSKVMIPL 1076
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 309 VNAAVVGSYVYIGKNVVIGRRC 244
V AA + ++Y+ K V +GR C
Sbjct: 55 VRAAAIARHIYLRKQVGVGRLC 76
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 339 DHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETI 187
DH +V + V + +GS+ + V+G V+ D + S+LP ++I
Sbjct: 301 DHAWVKSSIVGWNSTLGSWSRLENVSVLGDDVVVNDEIYVNGGSILPHKSI 351
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 309 VNAAVVGSYVYIGKNVVIGRRC 244
V AA + ++Y+ K V +GR C
Sbjct: 55 VRAAAIARHIYLRKQVGVGRLC 76
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 380 FLKGGRITEPLLIIQNLPVLTLAKSPLMMASL 475
FLK E L +QNLP + L P +A L
Sbjct: 69 FLKNQVFMEVLTALQNLPGMALLTVPWFLAEL 100
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 510 QNIVLHGKVIVQSDAIIR--GDLANVKTGRFCIISKGSVIRPPFKKFS 373
+++ G +++ + A +R GDL + +C++ +G IR P + S
Sbjct: 407 ESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEIS 454
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 7.5
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -3
Query: 300 AVVGSYVYIG--KNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPE 127
A++G + ++ +N +G C+L C + N + T + + +Y P HL
Sbjct: 179 ALLGEFAHVTAFQNNTLGN-CLL--CTPDKVNGI--TATSIREYLKYFYRPEHLTLAYAG 233
Query: 126 AMPDLMTEFTKSYYQHFLPTTA 61
++ E TK Y H LP+++
Sbjct: 234 IPQEIAKEITKELYGH-LPSSS 254
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = -3
Query: 225 MIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTTA*G*IE 46
+++ +++ V A S S I + +PDL ++ YYQ P+ ++
Sbjct: 451 LVDKENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRCTPSEMFHVLK 510
Query: 45 HFY 37
FY
Sbjct: 511 GFY 513
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 10.0
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 206 TELSSIMQQSLS-THLLPITTFFPM*TYEPTTAAFTTVFSPTKT*SPICKGKNATPLLNF 382
T +++ M+++ + T ++ TT PM TT+ + T +P+ + TP++
Sbjct: 64 TTITTPMEETTTITPMVETTTILPMAAMTTPMVETTTIPTVETTTTPMVETTTITPMVET 123
Query: 383 LKGGRITEPLLIIQNLPVLTLAKSPLMMASLCTITLP 493
+ E ++ + + T + + + +T P
Sbjct: 124 TTITPMVEAMITLMEETMTTPMEETTTILPMAAMTTP 160
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 102 FTKSYYQHFLPTTA*G*IEHF 40
FT ++Y +LP ++ G I+HF
Sbjct: 359 FTNTWYGDYLPISSSGIIDHF 379
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 389 GGRITEPLLIIQN 427
GGRI PL+I+QN
Sbjct: 618 GGRICRPLIIVQN 630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,849
Number of Sequences: 5004
Number of extensions: 41045
Number of successful extensions: 139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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