Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D21
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0449 + 3548389-3548503,3549282-3549425,3550087-3550212,355...    44   6e-05
07_03_1463 - 26722081-26722365,26722831-26722982,26723229-267233...    44   6e-05
02_03_0369 - 18239123-18239499,18242046-18242445                       42   4e-04
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186...    40   0.001
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206...    38   0.005
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890...    31   0.82 
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    30   1.1  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    29   1.9  
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801...    29   2.5  
11_05_0094 - 18995278-18995757,18995843-18996188,18996774-189968...    28   4.4  
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319...    28   4.4  
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522...    28   4.4  
04_01_0139 + 1560962-1561094,1561205-1561416,1561481-1561706,156...    28   4.4  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   5.8  

>12_01_0449 +
           3548389-3548503,3549282-3549425,3550087-3550212,
           3550468-3550619,3551118-3551402
          Length = 273

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 31/123 (25%), Positives = 57/123 (46%)
 Frame = -3

Query: 495 HGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGEN 316
           HG  I    +I+RGD+ ++  G    I   S++       S  V   P  +G++V +G +
Sbjct: 75  HGSSIWYG-SILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKV--LPTIIGNNVTIGHS 131

Query: 315 TVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITT 136
            V++A  V    ++G    +    V++   M+   S++   T +PS   + G+PA  +  
Sbjct: 132 AVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPAKFLRK 191

Query: 135 LPE 127
           L E
Sbjct: 192 LTE 194


>07_03_1463 -
           26722081-26722365,26722831-26722982,26723229-26723354,
           26724190-26724333,26724901-26725015
          Length = 273

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 32/136 (23%), Positives = 61/136 (44%)
 Frame = -3

Query: 495 HGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGEN 316
           HG  I    +I+RGD+ ++  G    I   S++       S  V   P  +G+ V +G +
Sbjct: 75  HGSSIWYG-SILRGDVNSIHIGVGTNIQDNSLVHVSKANISGKV--LPTIIGNSVTIGHS 131

Query: 315 TVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITT 136
            V++A +V    ++G    +    V++   M+   S++   T +PS   + G+PA  +  
Sbjct: 132 AVLHACIVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPAKFLRK 191

Query: 135 LPEAMPDLMTEFTKSY 88
           L E     + +   +Y
Sbjct: 192 LTEEEMAFIAQSATNY 207


>02_03_0369 - 18239123-18239499,18242046-18242445
          Length = 258

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
 Frame = -3

Query: 540 VSRQTVLCGXQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVA 361
           V+ + VL G   + ++    V S A++RGDL  +  G    + +  V+   +     G+ 
Sbjct: 80  VAPEAVLAG--QVTVYDGASVWSGAVLRGDLNKITLGFCANVQERCVLHAAWSA-PTGLP 136

Query: 360 FFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 181
              L +  +V VG   ++ +  +     IG++ ++    +++   ++E  SVLP    +P
Sbjct: 137 ADTL-VDRYVTVGAYCLLRSCTIEPECIIGQHSILMEGSLVETNSILEAGSVLPPGRRIP 195

Query: 180 SFARYSGSPAHLITTLPE----AMPDL---MTEFTKSYYQHFLP 70
           +   ++G+PA  +  L       +P L   + +  +S++  FLP
Sbjct: 196 TGELWAGNPARFVRKLTNEEIMEIPKLAVAINDLMQSHFSEFLP 239


>07_01_0250 -
           1864990-1865005,1865429-1865502,1865588-1865659,
           1865854-1865920,1866365-1866429,1866812-1866843,
           1867250-1867326,1867445-1867646,1867733-1867859
          Length = 243

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -3

Query: 450 LANVKTGRFCIISKGSVIRPPFKKFSKGV--AFFPLQMGDHVFVGENTVVNAAVVGSYVY 277
           L+N   G FC +  G+ I      F  G       +++G+HV +G NT ++   +G YV 
Sbjct: 115 LSNCSVGEFCTLHNGACIGQDGFGFFVGDDGQMLHVKIGNHVEIGANTCIDRGRLGDYVT 174

Query: 276 IGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPA 151
           +G  V I     +     +  NS +  +   P    Y G PA
Sbjct: 175 LGGRVAIRDHVSIASKVRLAANSSVTKDIQKP--GDYGGFPA 214


>01_02_0006 +
           10118766-10118775,10119383-10119526,10120534-10120659,
           10120885-10121003,10121355-10121609
          Length = 217

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 31/126 (24%), Positives = 54/126 (42%)
 Frame = -3

Query: 465 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 286
           ++RGD  NV+ G    I   S++       S  V  FP  +GD+V VG + V+    V  
Sbjct: 49  VLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKV--FPTIIGDNVTVGHSAVLQGCTVED 106

Query: 285 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMT 106
             ++G          L D  ++E + ++ A  +V     + G+PA  +  L +     + 
Sbjct: 107 EAFVGMG------ATLLDGVVVEKHGMVAAGALV-----WGGNPAKFLRKLTDDEITFIK 155

Query: 105 EFTKSY 88
           E   +Y
Sbjct: 156 ESASNY 161


>07_01_1029 -
           8902771-8902805,8903135-8903256,8904097-8904425,
           8905435-8905530,8906126-8906257,8907244-8907348,
           8907630-8907803,8908094-8908163,8908263-8908444,
           8908669-8908778,8909778-8909882,8909965-8910043,
           8910342-8910382,8910511-8910589,8910856-8910966
          Length = 589

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 423 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRR 247
           C   + S+++PP K+  KG+ F P   GD        ++ A V+   +++   +V+ R+
Sbjct: 193 CFFGELSIVKPPAKEVMKGL-FIPRLNGDGATADAIALLGALVMPHNLFLHSALVLSRK 250


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -3

Query: 450  LANVKTGRFCIISK-GSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYI 274
            L   K GR C I     V  P       GV      +GD   +            + + +
Sbjct: 1678 LLGAKIGRHCSIRAINPVANPELISVGDGV-----HLGDFCNIVPGFYSKGGFTSAEIKV 1732

Query: 273  GKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFA 172
             +N V+G   +L   C++++N +L A ++ P  A
Sbjct: 1733 QENTVVGSGSLLLPGCVLQENVILGALSVAPENA 1766


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 345 MGDHVFVGENTVVNAAVVGSYVYIGKNVVI 256
           +G+   VGEN  V+ +V+G    IGKNV+I
Sbjct: 373 VGNGTSVGENCKVSNSVIGQGCNIGKNVLI 402


>07_01_0954 -
           8016804-8016905,8017409-8017469,8017543-8017649,
           8018278-8018382,8018460-8018546,8018631-8018711,
           8018872-8018944,8019288-8019400,8019695-8019788,
           8020060-8020115,8020212-8020295,8020384-8020476,
           8020592-8020765,8020956-8021099,8021225-8021380
          Length = 509

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 333 VFVGENTVVNAAVVGSYVYIGKNVVI 256
           V VGENT++   ++     IGKNV+I
Sbjct: 447 VGVGENTIIRNCIIDKNARIGKNVMI 472


>11_05_0094 -
           18995278-18995757,18995843-18996188,18996774-18996837,
           18996924-18997078,18997377-18997618
          Length = 428

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 483 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVA 361
           ++ +DA+ R D  +V  G+F ++  G   RP F    +G+A
Sbjct: 116 LILADALERDDGLSVPPGKFYLVDAGYAARPGFLPPYRGMA 156


>09_04_0139 +
           15030753-15031208,15031298-15031523,15031599-15031981,
           15032353-15032685,15032902-15033010,15033089-15033465
          Length = 627

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 483 IVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVN 304
           +V  DAI R D   V  G+F ++  G   +P F    +GV +   + G +    E  + N
Sbjct: 211 VVLRDAIERTDGLRVPQGKFYLVDAGYGAKPRFLPPFRGVRYHLNEWGTNPVQNEKELFN 270


>05_07_0248 -
           28651807-28651908,28652001-28652061,28652164-28652270,
           28652369-28652473,28652556-28652642,28652814-28652894,
           28653083-28653155,28653243-28653355,28653439-28653532,
           28653633-28653688,28653779-28653865,28653975-28654064,
           28654178-28654348,28654752-28654871,28654981-28655193
          Length = 519

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 327 VGENTVVNAAVVGSYVYIGKNVVI 256
           VGENT +N  ++     +G+NVVI
Sbjct: 459 VGENTKINNCIIDMNARVGRNVVI 482


>04_01_0139 +
           1560962-1561094,1561205-1561416,1561481-1561706,
           1561782-1562029,1562374-1562392,1562747-1562886,
           1563134-1563361
          Length = 401

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 525 VLCGXQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQ 346
           VL G +    H  V+++ D+I R D   V  G+F ++  G   +P F    +GV +   +
Sbjct: 162 VLAGWETTA-HDAVVLR-DSIERTDGLRVPQGKFYLVDVGYGAKPGFLPPFRGVRYHLNE 219

Query: 345 MGDHVFVGENTVVN 304
            G +    E  + N
Sbjct: 220 WGSNPVQNEKELFN 233


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 217 RQLSSTCRDYCPFFCKVFRKPSTPDHYITRSNARSDDRV 101
           +Q+ S    YCP  C +    ST D  +     RS DR+
Sbjct: 409 QQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRI 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,655
Number of Sequences: 37544
Number of extensions: 249392
Number of successful extensions: 605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)