Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D20
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   1.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   7.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    24   7.2  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    24   7.2  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   9.5  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 263  IIKRSKM*QFQLLYKTLGTLFTNRAMLVKVVVELLT 156
            IIK +   Q+Q + K   +L  N A+  KVVV L+T
Sbjct: 1522 IIKWAHWNQYQAILKRYVSLLKNNAIDQKVVVRLIT 1557


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 70  CCHPWATVTTSL 105
           CCHPW   ++SL
Sbjct: 560 CCHPWLVKSSSL 571


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 151 KNIITTVGGLSYGLSED*WSLSPMDDSNAIHLFLKIWHL 35
           +++  TV  L   LSE    +SP   +  +H+F+KI+ L
Sbjct: 349 ESVPATVQSLMDLLSERLLDISPYCRTKVLHVFIKIFDL 387


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 15  LISKSSFKCQIFKNKCMAL 71
           + ++ +F+ QIFKNKC  L
Sbjct: 424 IYTQYAFQWQIFKNKCFQL 442


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 12  KLISKSSFKCQIFKNKCMALL 74
           KL +K+S++C + + KC+ ++
Sbjct: 63  KLFAKNSYRCSLKETKCIDVI 83


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 169 LSYLHXKNIITT 134
           LSYLH K IITT
Sbjct: 505 LSYLHSKGIITT 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,862
Number of Sequences: 5004
Number of extensions: 22679
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)