Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D15
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   274   1e-74

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  274 bits (671), Expect = 1e-74
 Identities = 141/268 (52%), Positives = 177/268 (66%), Gaps = 1/268 (0%)
 Frame = -3

Query: 804 ISXDQLPLFV*AVGITAFXXXXXXXXLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 625
           +S  Q+PLF  A+ IT+         LAG + +L +DRNLNTSF+ P GGGDP+LYQHLF
Sbjct: 183 LSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLF 242

Query: 624 *FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXGFIV*AHHIFTV 445
            FFGHPEVYILI+P FG++SHII      K  F               G +V +HH+FTV
Sbjct: 243 WFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTV 301

Query: 444 GIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLFTVGGLT 268
           G+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLT
Sbjct: 302 GLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLT 361

Query: 267 GVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQF 88
           GVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF
Sbjct: 362 GVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQF 420

Query: 87  FTIFIGVNITFFPQHFLGLAGIPRRYSD 4
           + +FIGVNI F PQHFLGL G+PRR  D
Sbjct: 421 WILFIGVNIVFGPQHFLGLNGMPRRIPD 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,980
Number of Sequences: 5004
Number of extensions: 43579
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)