Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_D11
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 239 3e-64
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 237 1e-63
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.60
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 1.0
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 2.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.4
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 4.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.6
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 7.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 7.4
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 9.8
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 9.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 9.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 239 bits (585), Expect = 3e-64
Identities = 118/255 (46%), Positives = 161/255 (63%), Gaps = 2/255 (0%)
Frame = -2
Query: 819 RKRLVVQDKXKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGL 640
RKRL+ Q K KYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL
Sbjct: 33 RKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGL 92
Query: 639 TNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLAR 460
N+ AAY+TG + E +++GP F+ +LDVGL R
Sbjct: 93 ANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKR 152
Query: 459 TTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLE 280
T+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L
Sbjct: 153 TSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212
Query: 279 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNK 106
DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + ++ +
Sbjct: 213 DDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQ 272
Query: 105 RKLTLAERKNRIKQK 61
RKLT ERK R K
Sbjct: 273 RKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 237 bits (581), Expect = 1e-63
Identities = 118/255 (46%), Positives = 160/255 (62%), Gaps = 2/255 (0%)
Frame = -2
Query: 819 RKRLVVQDKXKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGL 640
RKRL+ Q K KYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL
Sbjct: 33 RKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGL 92
Query: 639 TNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLAR 460
N+ AAY+TG + E +++GP F+ +LDVGL R
Sbjct: 93 ANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKR 152
Query: 459 TTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLE 280
T+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L
Sbjct: 153 TSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212
Query: 279 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNK 106
DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + + +
Sbjct: 213 DDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQ 272
Query: 105 RKLTLAERKNRIKQK 61
RKLT ERK R K
Sbjct: 273 RKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.60
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 210 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 52
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 183 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 52
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 213 AIEAIYKKAHEAIRADPSH--KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFXQE 40
++EA +K E I + KK LKK ++++ KRK A K+++A+
Sbjct: 12 SLEAKNEKPKEVILGEDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKKREANEIDY 71
Query: 39 TAGSGGSL 16
+AG G L
Sbjct: 72 SAGKYGDL 79
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -2
Query: 279 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 118
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 222 TADAIEAIYKK-AHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFX 46
T D I+ + K+ E ++ + ++ +LKK + + +K K+++ E+K R Q K +
Sbjct: 1636 THDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNKITQL 1695
Query: 45 QET 37
+ET
Sbjct: 1696 EET 1698
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 585 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 677
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 213 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 100
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 195 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFXQE 40
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQ 760
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 282 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 109
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 108 KRKLTLAERKNRIKQKKAS 52
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 222 TADAIEAIYKKAHEAIRADPSHKKKELK 139
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 192 KAHEAIRADPSHKK-KELKKDSVKQKRWNKRK-LTLAERKNRIKQKKASFXQETA 34
K E I + K+ +ELKK K+K+ +K+K L LA+ + R +++ ++ A
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAA 625
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 207 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN----RIKQKKASFXQE 40
E I + + H++K+ ++ V++K KRK +R+N ++ ++ + E
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569
Query: 39 TAGSGG 22
G GG
Sbjct: 570 VIGKGG 575
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 9.8
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -2
Query: 348 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 169
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 168 DPSHKKKE 145
+ KKE
Sbjct: 419 SSENNKKE 426
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 150 KELKKDSVK----QKRWNKRKLTLAERKNRIKQKKASFXQETAGS 28
++++ D+VK + R ++RKL AERK R K +K + E S
Sbjct: 106 EKMELDAVKGRKVESRVDRRKLEKAERKIRAKWEKRTIKAEYESS 150
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 303 AEYMRSLEQDDEDSFKRQFSKYIK 232
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 195 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 55
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,451
Number of Sequences: 5004
Number of extensions: 61190
Number of successful extensions: 274
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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