Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D07
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    28   8.2  

>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 246 KDLCFVRKFKAFRIHYHMTVPYIYKVSCVVVKKTNHPVSLQTEMFHKNYDLFILKKF 416
           +D C +  F  ++   ++   Y  K  CV++K+ + P  +   +FH NY L+ L+K+
Sbjct: 495 EDACAL--FDLYKNEQYLLTEYKGKF-CVILKEGSSPEDMLKSLFHVNY-LYWLEKY 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,000
Number of Sequences: 37544
Number of extensions: 301607
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)