Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D07
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024844-1|AAK29957.1|  124|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 321 VSCVVVKKTNHPVSLQTEMF 380
           +SC++VK T+HP+  + +MF
Sbjct: 355 ISCILVKSTDHPMLFELQMF 374


>AC024844-1|AAK29957.1|  124|Caenorhabditis elegans Hypothetical
           protein Y65B4A.4 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 561 NLFISLMSLLNTF*VNCIWCK*SFQKKKRCTC 466
           NLF +L S+   F V+C+W + S Q++ R +C
Sbjct: 73  NLFFTLFSM---FFVDCVWAQKSGQRRVRDSC 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,725
Number of Sequences: 27780
Number of extensions: 359493
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)