Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_D05
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 38 0.002
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.37
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 30 0.37
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 30 0.37
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 0.65
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.86
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 2.0
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 6.1
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 26 6.1
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 8.0
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 8.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.0
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -3
Query: 725 TINQVN-SEEDWSDWDNTNRQLTMAETESISIEADTIYLNTEKKEVPVIETNVAAEDSAL 549
TI +V+ S + S+ D + T+ ++ + I NTE KE+ + + ++ +
Sbjct: 172 TIGKVDLSNKSTSNQDQVDNTHVQNSTDGVNQDTGMILDNTEDKEINK-SMSYSMKNEGV 230
Query: 548 KKSLLQKAAIDAKRNIVDISELDIKHQKTSNT 453
K+S LQ A + +++I+D L+I K +NT
Sbjct: 231 KESSLQNATLINRKSIIDDEMLEIPLGKHNNT 262
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.3 bits (65), Expect = 0.37
Identities = 33/141 (23%), Positives = 63/141 (44%)
Frame = -3
Query: 728 STINQVNSEEDWSDWDNTNRQLTMAETESISIEADTIYLNTEKKEVPVIETNVAAEDSAL 549
+T+N+ + E+ ++ ++T Q + E+E+ +E+D +N K+ V E
Sbjct: 3925 NTLNEDDDLEELANEEDTANQSDLDESEARELESD---MNGVTKDSVVSEN--------- 3972
Query: 548 KKSLLQKAAIDAKRNIVDISELDIKHQKTSNTKKGADEFDFFADMKPVIEKAAVVSIDDL 369
+ S ++ D + DI E D+ + +E D + E++A + DL
Sbjct: 3973 ENSDSEEENQDLDEEVNDIPE-DLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDL 4031
Query: 368 VSKEFSSKLTFVPDENQDENE 306
VSKE +K D + E+E
Sbjct: 4032 VSKEDDNKALEDKDRQEKEDE 4052
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 398 KAAVVSIDDLVSKEFSSKLTFVPDENQDENEGWGENWND*ENKRND 261
K+ VV + EF++ L F +E DE+ W ENWND E N+
Sbjct: 588 KSRVVGNTENSKDEFNNPL-FETEEQIDES--WMENWNDEEETENN 630
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 614 LNTEKKEVPVIETNVAAEDSALKKSLLQKAAIDAKRNIVD-ISELDIKHQKTSNTKKGAD 438
LN E KE V+ + S KK L +A ++ D IS L+ + S+++KG+D
Sbjct: 26 LNPEVKEETVVSSTHRQTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASSSEKGSD 85
Query: 437 E 435
E
Sbjct: 86 E 86
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 479 IKHQKTSNTKKGADEFDFFADMKPVIEKAAVVSIDD 372
+ TSN K A F D KP++ ++V IDD
Sbjct: 407 LSEDDTSNGDKAAKRKGSFNDTKPIVNVPSIVEIDD 442
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.86
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Frame = -3
Query: 719 NQVNSEEDWSDWDNTNRQLTMAET--------ESISIEADTI-YLNTEKKEVPVIETNVA 567
NQ + E D++ D+ QL ++ E S+ A LN+EKK ++ T++
Sbjct: 384 NQQSDEADYNVTDDLILQLATQQSLEENKKSKELFSLSASEFDKLNSEKKTFEILSTDIP 443
Query: 566 AEDSALKKSLLQKAAIDAKRNIVDISELDIKHQKTSNTKKGADEF 432
AEDS SLL ++ D+S + + + + G F
Sbjct: 444 AEDS--MNSLLNDEENLKLEHVGDVSNDSLAFAEKKHPENGTSIF 486
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 2.0
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 10/182 (5%)
Frame = -3
Query: 776 TPVGGESLEEEVILRESTINQ------VNSEEDWSDWDNTNRQLTMAETESISIEADTIY 615
TP E L +++ + EST+ + NSE S DN N +T + E + ++
Sbjct: 342 TPKLVEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLW 401
Query: 614 LNTEKKEV-PVIETNVAAEDSA--LKKSLLQ-KAAIDAKRNIVDISELDIKHQKTSNTKK 447
+ + + + N+ + A LK LLQ + + + + S +K + TS K+
Sbjct: 402 AESSCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITS-LKQ 460
Query: 446 GADEFDFFADMKPVIEKAAVVSIDDLVSKEFSSKLTFVPDENQDENEGWGENWND*ENKR 267
E + A+ K + A L KE +KLT + ++N + + E D +NK
Sbjct: 461 TVSESE--AERKRLFSSAQE---KQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKE 515
Query: 266 ND 261
+
Sbjct: 516 EE 517
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 369 QIIDTDNSGLLDNRLHVSEKVKFVSTFFCITCFLMFNI 482
++I + +L+N ++ SEK+ F FC+T ++ I
Sbjct: 263 ELISKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWKI 300
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 206 SCLILKVL*STDYNYCINDHFFYSLNHSSFHPNLRSRL 319
S LI + + DY++C+N YS++H F P+ S L
Sbjct: 295 SVLIFLLSKNLDYDFCLNHLISYSMHH--FIPSFISLL 330
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 815 LTTFTNINLNERPTPVGGESLEEEVILRESTINQVNSEEDWSDWDNTNRQLTMAE 651
L T+ +++ T +E+E L +N N+ +DW +WD +T E
Sbjct: 53 LLTYKGVDVQVVLTDPARNFVEKED-LTALGVNVYNNADDWKNWDGLECPITHIE 106
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 746 EVILRESTINQVNSEEDWSDWDNTNRQLTMAETESIS 636
+V ++S INQ+ S E DWDN + +E+++
Sbjct: 142 QVKYQKSIINQLKSFEAIFDWDNIFYTMDQNRSEAVN 178
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/26 (30%), Positives = 21/26 (80%)
Frame = -1
Query: 532 KKQPLMPKETL*TYQSWILNIKKQVI 455
+++ L+P+ ++ Y+S+I +I+K++I
Sbjct: 1756 RQEQLIPRSSILVYESYIRDIEKEII 1781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,644
Number of Sequences: 5004
Number of extensions: 56464
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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