Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D05
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   8.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   8.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -3

Query: 728 STINQVNSEEDWSDWDNTNRQLTMAETESISIEADTIY 615
           S+I ++NSE     W++  +++T+  T  ++ E + ++
Sbjct: 78  SSIRRLNSEAHRIRWESVQKEVTVTGTYQLT-ETELVF 114


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 293 NWND*ENKRNDH*YNNY-NLYF 231
           N+N+  N  N++ YNNY  LY+
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYY 354


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 DHFFYSLNHSSFHPNLRSRLGFHRVR 337
           +HF++ LNH+     L + L F ++R
Sbjct: 229 NHFYFMLNHNYPPFMLSNSLNFPQIR 254


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 DHFFYSLNHSSFHPNLRSRLGFHRVR 337
           +HF++ LNH+     L + L F ++R
Sbjct: 229 NHFYFMLNHNYPPFMLSNSLNFPQIR 254


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 293 NWND*ENKRNDH*YNNYNLYFTK 225
           N+N+  N  N++  NNYN  + K
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 293 NWND*ENKRNDH*YNNYNLYFTK 225
           N+N+  N  N++  NNYN  + K
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,902
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)