Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_D03
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 350 8e-97
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 308 4e-84
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 31 0.97
AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical ... 29 2.9
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 350 bits (860), Expect = 8e-97
Identities = 164/212 (77%), Positives = 183/212 (86%), Gaps = 2/212 (0%)
Frame = -2
Query: 803 SFKFALDXKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKXQXEDAGIWYEHRLIDDMV 624
SFK+AL K+PLYLSTKNTILKKYDGRFKDIF +IY EY+ + + AGIWYEHRLIDDMV
Sbjct: 196 SFKYALQRKFPLYLSTKNTILKKYDGRFKDIFAEIYP-EYEAEFKAAGIWYEHRLIDDMV 254
Query: 623 AYAMKSEGGFVWACXNYDGDVQSDSVAQGYGSLGLXTSVLICPDGKTVEAEAAHGTVTRH 444
A AMKS+GGFVWAC NYDGDVQSDSVAQGYGSLGL TSVL+CPDGKTVEAEAAHGTVTRH
Sbjct: 255 AQAMKSDGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRH 314
Query: 443 FRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALXNFAETLEKVCIETIESGIMTKD 264
+R +Q+G+ETSTNPIASIFAW+RGL HRA LD N AL FA LE VCIET+E+G +TKD
Sbjct: 315 YRMHQKGQETSTNPIASIFAWSRGLAHRATLDKNSALETFANNLEAVCIETMEAGFLTKD 374
Query: 263 LAICIKGMN--NVKRSDYYETFEFMDKLAENL 174
LAIC+KG N V R+DY TFEF+DKLAENL
Sbjct: 375 LAICVKGGNASAVTRTDYLNTFEFLDKLAENL 406
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 308 bits (755), Expect = 4e-84
Identities = 141/206 (68%), Positives = 168/206 (81%), Gaps = 1/206 (0%)
Frame = -2
Query: 800 FKFALDXKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKXQXEDAGIWYEHRLIDDMVA 621
F++AL ++PLYLSTKNTILKKYDGRFKDIFQDIY+++Y+ ++ IWYEHRLIDD VA
Sbjct: 219 FQYALMKQWPLYLSTKNTILKKYDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLIDDQVA 278
Query: 620 YAMKSEGGFVWACXNYDGDVQSDSVAQGYGSLGLXTSVLICPDGKTVEAEAAHGTVTRHF 441
A+KS GGFVWAC NYDGDVQSD VAQGYGSLGL +SVL+CPDGKT+EAEAAHGTVTRH+
Sbjct: 279 QALKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMSSVLMCPDGKTIEAEAAHGTVTRHY 338
Query: 440 RFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALXNFAETLEKVCIETIESGIMTKDL 261
R +Q+G TSTNPIASIFAWTRGL HR LDNN+AL F+ TLEK CI+T+E G MTKDL
Sbjct: 339 REHQKGNSTSTNPIASIFAWTRGLHHRGVLDNNEALKTFSLTLEKACIDTVEEGKMTKDL 398
Query: 260 AICIKG-MNNVKRSDYYETFEFMDKL 186
+ICI G ++ Y T +F+ +
Sbjct: 399 SICIHGTKKGTEKGAYLITEDFLSAI 424
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 524 PVTHSPEQHYQIVRLHHNFXRPRQIHPLIS 613
PVT +PE+H + V+L HN P + PL++
Sbjct: 1208 PVTVTPEEHAEQVQLLHNLQNPSILRPLLN 1237
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = -2
Query: 416 TSTNPIASIFAWTRGLLHRAKLDNNDALXNFAETLEKVCIETIESGIMTKDLAI-CIKGM 240
T+T+PI SI +L+RAKL + + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 239 NNV--KRSDYYETFEFMDKLAEN 177
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = -2
Query: 416 TSTNPIASIFAWTRGLLHRAKLDNNDALXNFAETLEKVCIETIESGIMTKDLAI-CIKGM 240
T+T+PI SI +L+RAKL + + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 239 NNV--KRSDYYETFEFMDKLAEN 177
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical
protein ZK6.8 protein.
Length = 488
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = -2
Query: 563 VQSDSVAQGYGSLGLXTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFA 384
+ S + G G + L T L G V + A+ TVT+HF ++ +T + S+FA
Sbjct: 159 IGSSCMIVGAGIIALIT-FLTAGQGSEVAMDLANATVTQHFE--RRFSDTEIYLLFSVFA 215
Query: 383 WTR--GLLHRAKLDNNDALXNFAETLEKV 303
G + A L +ND + N E+ +K+
Sbjct: 216 AISFVGCITFALLPSND-IGNCIESSKKI 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,635
Number of Sequences: 27780
Number of extensions: 326113
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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