Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D03
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.36 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.36 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 583 AKIMMETYNLIVLLRAMGHWA 521
           A + M  +NLI ++  +GHW+
Sbjct: 273 ASVFMRIFNLICMMLLIGHWS 293


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 583 AKIMMETYNLIVLLRAMGHWA 521
           A + M  +NLI ++  +GHW+
Sbjct: 241 ASVFMRIFNLICMMLLIGHWS 261


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 477 G*SCPWHCYTSFQILSARKRDIHQ 406
           G  C WHC+   Q      +D+ Q
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 95  FYCNGIRGPNFFGMKTN 45
           FYC   + PNF  M+ N
Sbjct: 313 FYCAATKNPNFDRMQGN 329


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 771 SVLKH*EYNSQEIRWSFQRHLSRYL*Q 691
           + L H EY+   + +  QRH+  +L Q
Sbjct: 193 TTLSHAEYSMLLVYFHLQRHMGNFLIQ 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,346
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)