Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D02
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    28   1.2  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.1  
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    26   4.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.3  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   8.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.3  

>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 588 NPNNYKRHFMKQKSSQNNGLR*TSSFFLKEFSLKNILYSPRECC 719
           +P  Y++ F +Q   Q   +   S    K F L  ++YS  ECC
Sbjct: 77  DPKIYEKPFREQIRIQARDMGSRSFSTAKNFGLLGLIYSGSECC 120


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 LANRAHEFELQK*NSHDNSTILYFYVSNI 186
           +  R H  EL +  SHDN+T    Y++NI
Sbjct: 84  IIQRNHAIELLRSASHDNNTDAMLYLANI 112


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 567 VNKILICNPNNYKRHFMKQKSSQNNGLR*TSSFFLKEFSLKNILYSP 707
           V +++I  P   +    K KS    G+R T SFF   F  K++L+ P
Sbjct: 71  VFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDP 117


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 109  RAHEFELQK*NSHDNSTILYFYVSNITKLHFISNK*LTNVF 231
            R   F+LQ    H  +T LY Y   +  LH++ +    N F
Sbjct: 1021 RESYFDLQA--GHTRNTALYIYGRTMDNLHYLPSDYFANFF 1059


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 561 PCVNKILICNPNNYKRHF-MKQKSSQ 635
           PC NK L+    N KRHF +  KSS+
Sbjct: 154 PCKNKKLLREHMNNKRHFRLDPKSSE 179


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 109  RAHEFELQK*NSHDNSTILYFYVSNITKLHFISNK*LTNVF 231
            R   F+LQ    H  +T LY Y   +  LH++ +    N F
Sbjct: 1021 RESYFDLQA--GHTRNTALYIYGRTMDNLHYLPSDYFANFF 1059


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,797
Number of Sequences: 5004
Number of extensions: 52006
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)