Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_D02
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-4|CAB04703.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   4.5  

>Z81587-4|CAB04703.1|  203|Caenorhabditis elegans Hypothetical
           protein T06G6.5 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 325 ECYQIGSKLPRLTVHHQIEHYSNEI 399
           +C  IG  LPRL +H   EH  N++
Sbjct: 140 KCSFIGQSLPRLNLHFYFEHAKNQV 164


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -3

Query: 474 FYNS-MPINESISLAFIRLLI*YLM-LNLITVMFYLMMYS*SG*F*SDLVTFF 322
           FY   +PIN+S++  + +  +  +  LNL T+MFY ++ S S  F    +TF+
Sbjct: 31  FYQKRIPINQSMTFIYWKFSVDVVYTLNLTTLMFYYLLISLSANFIIKNLTFW 83


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 106 LLSSIKITQNNYRLSNLFVFFILLYVSL 23
           LL  +++ Q+  ++SN F FF++L + L
Sbjct: 427 LLEQLEVAQSTQQISNFFSFFVILIIVL 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,835
Number of Sequences: 27780
Number of extensions: 281634
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)