Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C24
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.018
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   8.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 0.018
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 427 GAPGQHPTPHPEEPGPFRGVQPDEYRG 347
           GAPG  P+PH     P RG  P+  +G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQG 45


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 664 LQAGHALXVSSVQFALHFTR*HFPXLNFSII 756
           L +GH   ++SV  AL     H P  + SII
Sbjct: 253 LFSGHESNIASVLHALQLYYPHVPEYSSSII 283


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 664 LQAGHALXVSSVQFALHFTR*HFPXLNFSII 756
           L +GH   ++SV  AL     H P  + SII
Sbjct: 268 LFSGHESNIASVLHALQLYYPHVPEYSSSII 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,954
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)