Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C23
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -2

Query: 227 TFTRNTKCSMKFVHTSGLYICRGSLDLRATH--IWNISNGICQKVVR*KLQKLNVK-SYL 57
           T+T +T C +  VH    +I +  ++L  T   I    N    K ++ +  K  V   + 
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFY 559

Query: 56  NI*YRLRKKAKSECHCII 3
           N+ Y+L    K E + I+
Sbjct: 560 NVVYKLIDNIKKEIYDIL 577


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -1

Query: 564 TIEIKLY-LNMNAIRSIWRLTPVRGV---TIPNYAIRSLSAN 451
           T+EI+ Y   +  +   W+ TPVRGV    +P + I     N
Sbjct: 176 TVEIESYGYTVLDVVMYWKETPVRGVEEAELPQFTIIGYETN 217


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 402 IPQEEPLVQQHEVAPLYWRIVIELHNLVL 488
           I Q + L+QQH ++P   +  ++ H+L L
Sbjct: 71  IHQMQQLLQQHILSPTQLQSFMQQHSLYL 99


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 576 N*DNTIEIKLYLNMNAIRSIWRLTPV 499
           N DN    KLY N+N I  I    PV
Sbjct: 97  NNDNNYNKKLYYNINYIEQIPVPVPV 122


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 472 CIIWYCNTSNRS*TPDTSYCIHI 540
           C+IW  +TS    TP   + + +
Sbjct: 77  CVIWIFSTSKSLRTPSNMFIVSL 99


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 472 CIIWYCNTSNRS*TPDTSYCIHI 540
           C+IW  +TS    TP   + + +
Sbjct: 77  CVIWIFSTSKSLRTPSNMFIVSL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,449
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)