Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C21
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    80   4e-16
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    74   2e-14
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    73   4e-14
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    31   0.22 
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.51 
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    28   2.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   3.6  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   6.3  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   8.3  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = -3

Query: 793 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLE-DNQDAESEEY 617
           R+E+RN LE+YAYS+K Q  D E+LG KV  +DK  + +A++   +WLE   +DA  EE+
Sbjct: 563 RIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEF 622

Query: 616 KKQKKTLEDVVQPIIAKLY 560
           + Q++ L+ VV PI  KLY
Sbjct: 623 EDQRQKLDAVVHPITQKLY 641


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 34/78 (43%), Positives = 52/78 (66%)
 Frame = -3

Query: 793 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 614
           R++++N LESYAYS++N L D   L  KV   DK  +++A+   I+WL+ N  A  +EY+
Sbjct: 533 RIQAKNHLESYAYSLRNSLDDPN-LKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYE 591

Query: 613 KQKKTLEDVVQPIIAKLY 560
            ++K LE V  PI+AK+Y
Sbjct: 592 DKQKELEGVANPIMAKIY 609


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = -3

Query: 793 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 614
           R++++N LESYAYS++N L D   L  KV   DK  +++A+   I+WL+ N  A  +E++
Sbjct: 533 RIQAKNHLESYAYSLRNSLDDPN-LKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFE 591

Query: 613 KQKKTLEDVVQPIIAKLY 560
            ++K LE V  PI+AK+Y
Sbjct: 592 AKQKELESVANPIMAKIY 609


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -3

Query: 790 VESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKK 611
           + S+N+  SY  S  N+LQD  K+ +K   DD  +  E      K L D  D  +    K
Sbjct: 355 ISSKNQTNSYL-SAANRLQDSPKI-SKARTDDALQALEVARVHEKLLSDKVDFVTLNLVK 412

Query: 610 QKKT 599
           + KT
Sbjct: 413 ESKT 416


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = -3

Query: 709 VTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAK 566
           V D+   + E+ L+  ++ ++ N+  ESE+YK  +++L  V + ++A+
Sbjct: 36  VVDEYSKESEDVLENGLEHVQSNEFTESEDYKSIERSLA-VTEAVMAR 82


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = -3

Query: 778 NELESYAYSIKNQLQDKEKLGAKVTDDDKAKM----EEALDAAIKWLEDNQDAESEEYKK 611
           +EL   +  +  +  ++E     V DD+   +    +E L     W+E N+D  +EE  K
Sbjct: 374 DELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAK 433

Query: 610 QKKTLEDVVQPII 572
             K  ED+ + I+
Sbjct: 434 NLKLQEDLKKGIV 446


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 751  IKNQLQD--KEKLGAKVTDDDKAKMEEALD 668
            +KNQ+ D  KEKL    +DD+K  ++E  D
Sbjct: 1094 LKNQIDDLAKEKLPLSSSDDEKVNIKEKTD 1123


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 739 LQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQ 581
           L  K+K+  K   ++    +EALD ++K     ++  +E  K  K  LE+  Q
Sbjct: 600 LSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQ 652


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -3

Query: 748 KNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLE---DNQDAESEEYKKQKKTLED 590
           K + + +E+   ++TD    + ++ L   I+ LE   +  ++E+E+Y+KQK+ LE+
Sbjct: 135 KEEQKIQEEFERQITD--LLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEE 188


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -3

Query: 793 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDNQDAESEEYK 614
           +   +N  ++ A  + +   D+E+  +      K K  ++ D   + L+D     SE+ K
Sbjct: 119 KASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDK 178

Query: 613 KQKK 602
           K+KK
Sbjct: 179 KKKK 182


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 787 ESRNELESYAYSIKNQLQDKEKLGAKVTDD-DKAKMEEALDAAIKWLEDNQDAESEEYKK 611
           ES N  +S +Y  +       ++   V  D  ++ M+E      K+++ ++ +++ +   
Sbjct: 260 ESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEKQSKIEKYMKSDKSSKNFKPPF 319

Query: 610 QKKTLEDVV 584
           QKK+ ED+V
Sbjct: 320 QKKSWEDLV 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,390
Number of Sequences: 5004
Number of extensions: 55314
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)