Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C20
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 306 3e-84
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 260 2e-70
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.12
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 29 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.9
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 7.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 7.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 7.8
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 306 bits (751), Expect = 3e-84
Identities = 139/246 (56%), Positives = 171/246 (69%)
Frame = -2
Query: 846 RFRCKGQELYHFMGCSTFSQYTVVXEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 667
RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGYGAA TA
Sbjct: 134 RFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITAD 193
Query: 666 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 487
++ G + A+F A RI G+D+NP+K A FG +F+NP D
Sbjct: 194 IKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQS 253
Query: 486 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 307
PIQ VL+ TDGGL++TF+C GNV MR+ALEACHKGWG S++IGVAAAG+EISTRPFQL
Sbjct: 254 PIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQL 313
Query: 306 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 127
VTGR W+G AFGG K R +P LV EYL+ KL +D+++TH PLKEINEAF MH G I
Sbjct: 314 VTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCI 373
Query: 126 RAVVDM 109
+ V+ +
Sbjct: 374 KTVLSI 379
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 260 bits (636), Expect = 2e-70
Identities = 122/246 (49%), Positives = 162/246 (65%)
Frame = -2
Query: 846 RFRCKGQELYHFMGCSTFSQYTVVXEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 667
RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV TG+GA ++AK
Sbjct: 131 RFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAK 190
Query: 666 VEPGSNCAIFXXXXXXXXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK 487
VE GS A+ A+RII +DIN DK AKKFG +F++ K
Sbjct: 191 VESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKV-K 249
Query: 486 PIQQVLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQL 307
+ Q ++D+TDGG++Y F+C GNV M+ L+ CHKGWG +IGVAAAG+ + RPF +
Sbjct: 250 DLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLV 309
Query: 306 VTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSI 127
VTGR G+AFGG K R +P VDEY++ +DE++T+ PLK IN+AF MH GK I
Sbjct: 310 VTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCI 369
Query: 126 RAVVDM 109
R VVDM
Sbjct: 370 RCVVDM 375
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.9 bits (69), Expect = 0.12
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 579 RIIGVDINPDKFEVAKKFGVNEFVNP 502
R++G+D +PD + A++ G+N +V P
Sbjct: 57 RVVGIDASPDMIKAARELGLNAYVIP 82
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 174 KEINEAFHLMHAGKSIRAVVDM*FLRKNIYTIFVHLLNLFASALTTRIXKRHN 16
K +N F L H K+ + DM ++RKN Y N A++L R+ +N
Sbjct: 444 KLLNLTFELQHLRKTSKNDEDMSYVRKNSYN-----TNALANSLKNRVLSTYN 491
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 278 AVPFQVRPVTSWNGRVLISSPAAATPMIT 364
+VP+ PVTS N + S+P +TP+ T
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 529
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 278 AVPFQVRPVTSWNGRVLISSPAAATPMIT 364
+VP+ PVTS N + S+P +TP+ T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 762 LCKVAEAAPLDKVCLLGCGVPTGY 691
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 372 GVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGG 268
G V+IG + G E++ + +T T G GG
Sbjct: 110 GALVVIGTSLGGHELTNGGKEFITSATSLGALLGG 144
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 90 IYTIFVHLLNLFASALTTRIXKRHN 16
IYT+F HLLN++ + K N
Sbjct: 1720 IYTLFEHLLNIYKETINDSDKKEKN 1744
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -1
Query: 352 CSCCW---RRDQHSSIPTCYRSHLEGNSFWR 269
C CW + D + P C R + E N WR
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,861
Number of Sequences: 5004
Number of extensions: 67803
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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