Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C17
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 77 4e-15
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.26
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 1.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 28 1.4
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 2.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.7
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 5.7
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 7.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 9.9
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 76.6 bits (180), Expect = 4e-15
Identities = 39/87 (44%), Positives = 52/87 (59%)
Frame = -2
Query: 360 LVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXXXXX 181
L+ +F EEQ+ RYE++RRA K VK+L I SV NV I +SG +KVF+G
Sbjct: 96 LLESFDEEQMQRYEVFRRANLNKTNVKKLANQILNQSVTPNVAIVISGFSKVFVGEIVEL 155
Query: 180 XXXXXEKSGESGPLQPKHLREALRRLR 100
++ G++GPL P HLREA R R
Sbjct: 156 ARKIQDQWGDTGPLSPDHLREAYRLSR 182
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.26
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -2
Query: 735 DTYAEISQNVETVHKADELGNIYTDNSEYLNQTDVLTDVTDHYESYGND---YQFENSYN 565
D E + N+ K++ GN Y N V T + D E ND QF++ +N
Sbjct: 76 DQLTENNDNLYNDKKSN--GNFYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFN 133
Query: 564 QFQSDGEKYD 535
+F++DG++ D
Sbjct: 134 RFKADGQEKD 143
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -2
Query: 666 TDNSEYLNQTDVLTDV----TDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAES 511
TD+++ +N++D +++ +DH + +D + +N N S +K + DAES
Sbjct: 193 TDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAES 248
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = -2
Query: 765 QNTNIETEVIDTYAEISQNVETVHK-----ADELGNIYTDNSEYLNQTDVLTDVTDHYES 601
++ + + +V++ + E+S N + + D L + + + D D DH+
Sbjct: 692 ESNSSDDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRLSFESANDSDQDNRDHFAQ 751
Query: 600 YGNDYQFENSYNQFQSDGEKYD 535
Y + +N+ NQF S E D
Sbjct: 752 YMSQQISDNNANQFSSSDEDDD 773
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -2
Query: 816 LKEEPEYTTLVNYGESDQNTNIETEV----IDTYAEISQNVETVHKADELGNIYTDNSEY 649
L + P + T +N S + E V +D + E+S VET D++ ++ + +
Sbjct: 234 LCQPPNFVTSINKAGSSSDHGGELHVTYCPVD-HNEVSDGVETDIDVDQVDSLTGIHDHH 292
Query: 648 LNQTDVLTDVTDHYESYGNDYQFEN 574
+ + L D+T+ + N+ N
Sbjct: 293 IINNEQLIDLTEQEKKQPNESNLSN 317
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = -2
Query: 822 EXLKEEPEYTTLV---NYGESDQNTNIETEVIDTYAEISQNVETVHKADELGNIYTDNSE 652
E L +E TTL NY S + E I S VE + + + N Y NS+
Sbjct: 154 EDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPP--SPEVEKIETSTSVENAYITNSQ 211
Query: 651 Y---LNQTDVLTDVTDHYESYGNDYQ 583
Y L+ D +D+ +E D++
Sbjct: 212 YNDTLDMEDQTSDLITTFEHENEDHE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 717 SQNVETVHKADELGNIYTDNSEYLNQTD-VLTDVTDHYESYGNDYQFENSYNQFQSDGEK 541
S + ET + + TD+S+Y +Q D V D D + N+ ++++ + S+ +
Sbjct: 186 SNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYE 245
Query: 540 YDRGVGDAE 514
D V + E
Sbjct: 246 RDEDVDEEE 254
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 612 HYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVP 499
HY+ YGN + N Y+ +Q G Y+ + S P
Sbjct: 303 HYDRYGNSHPSYNKYSHYQ-HGFNYNNSGNNRNESGHP 339
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 630 LTDVTDHYESYGNDYQFENSYNQFQSD 550
LT V +HY++YGN E + ++ D
Sbjct: 671 LTIVCNHYQNYGNSESTEFELSNYKQD 697
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 348 FTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNV--VIAMSGIAKVFIG 196
F+ N ++ + AF A V+ QT+ GC G+++ V+ SG A G
Sbjct: 59 FSSRPCNAAAVFTKNAFQAAPVQVSRQTLNGCG-GKDIHCVVFNSGCANAVTG 110
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 747 TEVIDTYAEISQNVETVHKADELGNIYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSY 568
T + +IS +ET+ K+D + ++N +N+ + + E Y FE+ Y
Sbjct: 244 TAAMQAIDDISGTIETI-KSD-CYKVESENKGLINEVMDMRNFVQQLEQ--ELYAFEDDY 299
Query: 567 NQFQSDGE 544
++ Q+D E
Sbjct: 300 SRIQNDEE 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,117
Number of Sequences: 5004
Number of extensions: 49625
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -