Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C17
(829 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFII... 139 1e-32
D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta pro... 139 1e-32
CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein. 139 1e-32
BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II... 139 1e-32
BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II... 139 1e-32
BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II... 139 1e-32
AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II... 139 1e-32
AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II... 139 1e-32
M84378-1|AAA59604.1| 365|Homo sapiens lymphocyte antigen protein. 31 6.7
AF440105-1|AAL35227.1| 181|Homo sapiens MHC class I antigen pro... 31 6.7
AF157564-1|AAD45324.1| 181|Homo sapiens MHC class I antigen pro... 31 6.7
>X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFIID
subunit TAFII28 protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding proteinonent, Christmas disease, hemo
protein.
Length = 211
Score = 139 bits (336), Expect = 1e-32
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = -2
Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+KRL+Q+ITG SV QNVVIAMSGI+KVF+G
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEV 165
Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFF 55
EK GE PLQPKH+REA+RRL+ +G IP+ K + F
Sbjct: 166 VEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIF 210
>M84378-1|AAA59604.1| 365|Homo sapiens lymphocyte antigen protein.
Length = 365
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 597 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 442
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 128 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 182
>AF440105-1|AAL35227.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 597 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 442
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 103 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 157
>AF157564-1|AAD45324.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 597 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 442
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 103 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 157
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,107,372
Number of Sequences: 237096
Number of extensions: 1491540
Number of successful extensions: 4479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4478
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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