Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C17
         (829 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06457-1|AAB19245.1|  196|Drosophila melanogaster transcription ...   145   6e-35
AE014134-1688|AAF52806.1|  196|Drosophila melanogaster CG4079-PA...   145   6e-35
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      30   3.4  
AY061296-1|AAL28844.1|  339|Drosophila melanogaster LD20718p pro...    29   7.8  
AE014298-1807|AAF48199.2|  339|Drosophila melanogaster CG4004-PB...    29   7.8  

>U06457-1|AAB19245.1|  196|Drosophila melanogaster transcription
           initiation factorTFIID 28 kDa subunit protein.
          Length = 196

 Score =  145 bits (352), Expect = 6e-35
 Identities = 72/106 (67%), Positives = 83/106 (78%)
 Frame = -2

Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
           MQVLVSNFTEEQL+RYEMYRR+AFPKAAVKRLMQTITGCSV QNVVIAMSGIAKVF+G  
Sbjct: 89  MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEV 148

Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFFK 52
                   E  GESG LQPK +REA+RRLR +  +P  +  + +F+
Sbjct: 149 VEEALDVMEAQGESGALQPKFIREAVRRLRTKDRMPIGRYQQPYFR 194


>AE014134-1688|AAF52806.1|  196|Drosophila melanogaster CG4079-PA
           protein.
          Length = 196

 Score =  145 bits (352), Expect = 6e-35
 Identities = 72/106 (67%), Positives = 83/106 (78%)
 Frame = -2

Query: 369 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVKRLMQTITGCSVGQNVVIAMSGIAKVFIGXX 190
           MQVLVSNFTEEQL+RYEMYRR+AFPKAAVKRLMQTITGCSV QNVVIAMSGIAKVF+G  
Sbjct: 89  MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEV 148

Query: 189 XXXXXXXXEKSGESGPLQPKHLREALRRLRVRGAIPSRKVHRSFFK 52
                   E  GESG LQPK +REA+RRLR +  +P  +  + +F+
Sbjct: 149 VEEALDVMEAQGESGALQPKFIREAVRRLRTKDRMPIGRYQQPYFR 194


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
 Frame = -2

Query: 801 EYTTLVNYGESDQNTNIET------EVIDTYAEISQ-NVETVHKADELGNIYTDNS-EYL 646
           EY  L N+G  D N   +       +  D Y E++  N ++  +  EL +   D+S EY 
Sbjct: 267 EYQEL-NHGNQDSNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQ 325

Query: 645 NQTDVLTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESS 508
           +   V  D    Y+++ ++YQ  +S +++Q+   +Y     D E +
Sbjct: 326 DLNHVNQDSNHEYQAWNHEYQ--DSNHEYQALNREYQYPESDEEEA 369


>AY061296-1|AAL28844.1|  339|Drosophila melanogaster LD20718p
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -2

Query: 672 IYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVPAT 493
           +Y D    L     L ++    +SY N +  +   N F++   +  R V D+ ++  P  
Sbjct: 11  LYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKP-- 68

Query: 492 TDFHHTESSHIYEFQTAE 439
           T ++  E   +YE +T E
Sbjct: 69  TLWYFKELDFLYELETGE 86


>AE014298-1807|AAF48199.2|  339|Drosophila melanogaster CG4004-PB,
           isoform B protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -2

Query: 672 IYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVPAT 493
           +Y D    L     L ++    +SY N +  +   N F++   +  R V D+ ++  P  
Sbjct: 11  LYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKP-- 68

Query: 492 TDFHHTESSHIYEFQTAE 439
           T ++  E   +YE +T E
Sbjct: 69  TLWYFKELDFLYELETGE 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,328,549
Number of Sequences: 53049
Number of extensions: 513944
Number of successful extensions: 1853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)