Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C13
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 200 2e-52
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 86 5e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 6e-10
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.9
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 6.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 6.7
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 6.7
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 8.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.9
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 25 8.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 200 bits (487), Expect = 2e-52
Identities = 88/119 (73%), Positives = 106/119 (89%)
Frame = -1
Query: 763 FXGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQE 584
F G++SMKEVDEQ+ S+Q KNS++FVEWIP+NV AVC +PPK LKMS+TFIGN+T+IQE
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQE 376
Query: 583 LFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQEATAEDDTE 407
+F+R+ +QFSAMFRRKAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQEA ++ E
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDE 435
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 86.2 bits (204), Expect = 5e-18
Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Frame = -1
Query: 763 FXGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKMSST--------FI 608
+ G + ++V + +I+ K + FV+W P K +CD PP+ ++ S +
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 607 GNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQEA 428
NTT+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ +
Sbjct: 379 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Query: 427 TAEDD 413
+ E D
Sbjct: 439 SMEVD 443
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.4 bits (192), Expect = 1e-16
Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Frame = -1
Query: 763 FXGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKMSST--------FI 608
+ G + ++V + SI+++ + FV+W P K +C PP+ + S +
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 607 GNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQEA 428
NTT+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ +
Sbjct: 383 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Query: 427 TAEDD 413
+ +++
Sbjct: 443 SMDNE 447
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.3 bits (137), Expect = 6e-10
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Frame = -1
Query: 757 GRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPP---KGLKMSSTFIGNTTAIQ 587
G +V + +L I+ + + F+ W P +++ A+ P ++S + N T+I
Sbjct: 326 GEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIA 385
Query: 586 ELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN---VNDLVSEYQQYQE 431
LFKR +Q+ + +R AFL Y E + E + NE +S+ V DL++EY+ ++
Sbjct: 386 SLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 16 VRSISSDSLVSLY*KQXFN 72
VR++SSDS VSLY +Q F+
Sbjct: 42 VRTVSSDSSVSLYDRQLFD 60
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -1
Query: 610 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQ 434
+ N + L+K + E+FS +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.7
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = +1
Query: 163 IESFEMVVGPPGTLGLVLARDLASNYTREG*I*QHPRDS---PYYAASMRFRFESELQRS 333
I E V P L + + Y EG PR+S P + S S LQ +
Sbjct: 184 ITKSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPLLSVSA-LSSSSHLQPT 242
Query: 334 **GSEVRSSHGARPAPTPP 390
S + +RPAPTPP
Sbjct: 243 SATSSSSRLYPSRPAPTPP 261
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 727 QMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKMSSTFIG 605
++ SI+ K SF+ E +P + TAV P GL ++ TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 465 LTLLSASLNSISSMPSPVYQ 524
LT LS +LNS+ M SP+Y+
Sbjct: 234 LTCLSGTLNSLVEMLSPLYE 253
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 604 NTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDE 497
N++ IQ L K I+ + +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 639 GGMSHTAVFTLLGIHSTKKLLFLFWM 716
GG S + LLG + T K F WM
Sbjct: 370 GGFSDAEIIVLLGENGTGKTTFCKWM 395
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -3
Query: 710 KQEQQLLRRVDPQQRENSRVRHPSQGSEDVVYVYRQHDSHPGTIQENIRAVL 555
+Q+QQ + PQQ+++ + + P + + +Q H G IQ+ + ++
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSG-IQQPVSTIV 217
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 479 CF--VELHLVHALAGVPVQESFTSEHGRE 559
CF +E L HA+ +P +SF GRE
Sbjct: 250 CFDKLEAKLAHAMMSIPATKSFEIGSGRE 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,212
Number of Sequences: 5004
Number of extensions: 51758
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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