Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C13
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.58 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = -3

Query: 749  VHEGGRRADALHPKQEQQLLRRVDPQQRENSRVRHPSQGSEDVVYVYRQHDSHPGTIQEN 570
            V    ++     P+Q+QQ  ++  PQQ+     +   Q  +      +Q    P   Q+ 
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQ---QQQQQQQQPQQQQKE 1549

Query: 569  IRAVLCHVQT*SFLALVHRRGHGRDGVQRSREQRQR 462
              AV   V     L   +  G+ R G Q + +Q+Q+
Sbjct: 1550 YGAVSGLVVQ---LQRGYNSGNNRSGEQANSQQQQQ 1582


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/58 (20%), Positives = 19/58 (32%)
 Frame = -3

Query: 761 PRPHVHEGGRRADALHPKQEQQLLRRVDPQQRENSRVRHPSQGSEDVVYVYRQHDSHP 588
           P PH H  G     +H            P  + ++ + H S  +   +     H  HP
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHP 469


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 600 RQPSRNYSREYPSSSLPCSDVKLSCTGTPARAWTRWS 490
           R  S + +  Y   SL  SD+ L  +G P   +  WS
Sbjct: 80  RNKSMHTATNYYLFSLAVSDLLLLISGLPPEIYYIWS 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 465 LTLLSASLNSISSMPSPVYQCKKALR-LNMAEN 560
           L   +AS NS+ S+P  ++   + LR +++A N
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRDLREIHLAYN 295


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 349  VRSSHGARPAPTPPGL 396
            +++ HG +  PTP GL
Sbjct: 1250 IKTLHGLKVIPTPAGL 1265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,443
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)