Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C12
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   2.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   2.8  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    26   4.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   4.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   4.9  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   8.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   8.6  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -2

Query: 686 MKVDRTVEPDE----VQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQG 519
           M  D  VE D     ++  P  +EQ+    V+++     S T  S  K   +PND   Q 
Sbjct: 1   MNSDDNVEADASSNIIKDSPKIKEQENTSTVNESDVLATSTTASSGVKRKRLPNDLVGQL 60

Query: 518 RD 513
           RD
Sbjct: 61  RD 62


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 653 VQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNR 504
           + +KP +       LV ++ +T  S  +  Q+  A++PN  T +  D+N+
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNK 446


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = -2

Query: 629 EQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGT 495
           E+Q+K+L   A+   A+P + S++KSA     RTR  R+S+ S T
Sbjct: 184 ERQLKQLPD-AEQPAAAPVKKSKQKSASTAPPRTR--RNSSVSST 225


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 308 VWKFPIDNEQG--LEEEQKIHFSEHIFLDTHL 219
           V KFP DN +G   E+EQKI   E ++    L
Sbjct: 277 VLKFPFDNTRGNEYEKEQKIRNDELVYYHLQL 308


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 407 HPVLFHSLVLLS*IYQVAHHQIYQFL*FVEYHFC 508
           +PV+  SL++LS IY++ + Q++  +     H C
Sbjct: 498 YPVVQKSLIILSKIYRLVNSQVFDEIALELVHSC 531


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 446  FKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKMIL 327
            FK+T P Y  +  +W +L+ + L   TA    NY + + L
Sbjct: 905  FKSTAPEYTLRTRIWASLRSQTL-YRTASGMMNYSRALKL 943


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -2

Query: 605 SKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSG-TPQITEIDI---FGGEP 456
           S A +T  SP+R S   S Y+P  ++     SN S  TP   +  +   FG  P
Sbjct: 199 SYAGSTFGSPSRSSIDSSTYLPRSKSVNSLSSNFSARTPASNQSSVSEDFGAAP 252


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 518 RDSNRSGTPQITEIDIFGGEPLGIFKTTEPNYGTKLDVWENLKKREL 378
           + SNRSGT  I+   I    P       EP   +K D  +  K+ E+
Sbjct: 357 KKSNRSGTSSISSSGILESSPATSISVDEPQKDSKDDSEKVEKETEV 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,245
Number of Sequences: 5004
Number of extensions: 70977
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)