Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C12
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0187 - 6248226-6249226,6249296-6250148                           31   1.3  
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190...    29   5.2  
01_07_0032 - 40608330-40609474,40611524-40611647                       29   5.2  
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524...    28   6.8  
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157...    28   6.8  
06_02_0019 - 10656005-10657511,10657712-10658739                       28   9.0  
03_02_0698 - 10496316-10498127,10498539-10498559                       28   9.0  
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939...    28   9.0  

>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
 Frame = -2

Query: 728 INQTSTTLSDLLVGMKVD--RTVEPDE--VQQKPDTREQQVKRLVS---KAKTTEASPTR 570
           +N+T     D+L+G KV    T+ P E  + Q  +   +  KR+V+   +A  + AS   
Sbjct: 408 LNRTVVYWEDVLLGPKVTVGPTILPRETTILQTWNDGPENTKRVVAAGYRAIVSSASYYY 467

Query: 569 YSQRKSAYVPNDRTRQGRDSNRSGTPQITEIDIFGGEPLGIFKTTEPNY 423
                  +V ND     ++  R GTP   +    GG     FKT +  Y
Sbjct: 468 LDCGHGGWVGNDSRYDKQEKEREGTPLFNDPGGTGGSWCAPFKTWQRVY 516


>11_03_0184 +
           11317787-11318198,11318337-11318671,11318756-11319048,
           11319125-11319483,11319549-11319748,11319823-11320012,
           11320084-11320188,11320262-11320338,11320428-11320649
          Length = 730

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 665 EPDEVQQKPDTREQQVKRLVSKAKTTEASPTRYSQ--RKSAYVPNDRTRQGRDSN 507
           E D+  +KP  RE   K+L  +A   + + +R +   RKS+  P+D    G+DSN
Sbjct: 307 EADDTTRKPGDRET-TKKLPKQATPRKKTFSRPAPKIRKSSRKPSDIDPSGKDSN 360


>01_07_0032 - 40608330-40609474,40611524-40611647
          Length = 422

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 422 GTKLDVWENLKKRELSLATAQPPANYFQKM 333
           G +  VWEN K   L   + + PA Y++ M
Sbjct: 253 GARASVWENFKDNPLFDISTEHPATYYEDM 282


>12_01_0633 -
           5241098-5241283,5241361-5241453,5241555-5241615,
           5241703-5241813,5241960-5242145,5242229-5242590,
           5242730-5243152,5243159-5244382,5244468-5244707
          Length = 961

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
 Frame = -2

Query: 668 VEPDEVQQKPDTREQQVKRLV-SKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRS--G 498
           + P E +  P   ++Q K+ V SK K   A+ T  +Q+        R +  R  NR   G
Sbjct: 75  IPPKEGETAPRRSKRQPKKKVPSKDKDVPANTTG-TQKSERSAKAKRRKGERSVNRKDEG 133

Query: 497 TPQITEIDIFGGEPLGIFKTTEPNYGTKLDVWENLKKRELSLATAQ-PPANYFQKMILWT 321
              +T +    GEPL   KT    + ++  +   + + ++S+            K +LW 
Sbjct: 134 FHVVTHVSP-KGEPLAP-KTARAKFSSQCGI---IVREKISITVKDWDHVTDGDKEVLWK 188

Query: 320 NQGKVWKFPIDNE 282
              K+++FP  +E
Sbjct: 189 ELKKIFQFPEGSE 201


>03_06_0636 -
           35215034-35215336,35215417-35215584,35215599-35215799,
           35215877-35215962,35216037-35216229,35216304-35216489
          Length = 378

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 562 CEYLVGEASVVFALLTSLFTCCSLVSGFCWTSSGSTV 672
           C  LVG+    F  L  L    SL   FC+  +G TV
Sbjct: 113 CRRLVGDTISFFGQLNHLVNTVSLGHDFCFEEAGDTV 149


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 267 GTKDTFLRAHIFGHTSRRLVPEERTDTPLHGAGLRRALKESILHRPGE 124
           G   TF + H  G  + ++ PE   ++   G G R A + S +H P +
Sbjct: 793 GVLSTFGQGHKAGGNNPQITPELDAESQEPGNGRRTAAQGSYMHYPSQ 840


>03_02_0698 - 10496316-10498127,10498539-10498559
          Length = 610

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 350 WPEAV-QLLNLALVSLGSPKHPVLFHSLVLL 439
           W E + Q+LN     +   +HP +FH LVLL
Sbjct: 205 WTEVINQILNALFTIMCLYQHPKIFHHLVLL 235


>02_04_0022 -
           18992517-18993033,18993119-18993360,18993535-18993923,
           18995447-18995603
          Length = 434

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 422 GTKLDVWENLKKRELSLATAQPPANYFQKM 333
           G +  +WEN K   L   + + PA Y++ M
Sbjct: 264 GARASLWENFKNNPLFDISTEHPATYYEDM 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,201
Number of Sequences: 37544
Number of extensions: 434187
Number of successful extensions: 1218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)