Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C12
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022045-1|AAH22045.1|  395|Homo sapiens mitochondrial ribosomal...   141   3e-33
AL355132-2|CAH70977.1|  395|Homo sapiens mitochondrial ribosomal...   141   3e-33
AL161614-1|CAH72771.1|  395|Homo sapiens mitochondrial ribosomal...   141   3e-33
Z68747-1|CAA92951.1|  395|Homo sapiens imogen 38 protein.             140   5e-33

>BC022045-1|AAH22045.1|  395|Homo sapiens mitochondrial ribosomal
           protein S31 protein.
          Length = 395

 Score =  141 bits (341), Expect = 3e-33
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)
 Frame = -2

Query: 713 TTLSDLLVGMKVDRTVEPDEVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPND 534
           TT S+LL   ++ +  E    Q+     +     ++S  K   ++  R   R    +  D
Sbjct: 172 TTKSELL--SQLQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFD 229

Query: 533 RTRQGRDSNRSGTPQITEIDIFGGEPLGIFK----TTE-PNYGTKLDVWENLKKRELSLA 369
                              +IF G+ L IF     T E P   T   +W+    ++L+  
Sbjct: 230 EGYDNYPGQEKTDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATV 289

Query: 368 TAQPPANYFQKMILWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLEDWCPKKGPI 189
             QP  N F+++I WT +GK+W+FPI+NE G +++    F EHIFL+ HLE + PK+GPI
Sbjct: 290 NEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGS-EFHEHIFLEKHLESF-PKQGPI 347

Query: 188 RHFMELVCVGLSKNPFYTAQEKKEHIMWYKDYFVTKKDLLTE 63
           RHFMELV  GLSKNP+ + ++K EHI W+++YF  KKD+L E
Sbjct: 348 RHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKE 389


>AL355132-2|CAH70977.1|  395|Homo sapiens mitochondrial ribosomal
           protein S31 protein.
          Length = 395

 Score =  141 bits (341), Expect = 3e-33
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)
 Frame = -2

Query: 713 TTLSDLLVGMKVDRTVEPDEVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPND 534
           TT S+LL   ++ +  E    Q+     +     ++S  K   ++  R   R    +  D
Sbjct: 172 TTKSELL--SQLQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFD 229

Query: 533 RTRQGRDSNRSGTPQITEIDIFGGEPLGIFK----TTE-PNYGTKLDVWENLKKRELSLA 369
                              +IF G+ L IF     T E P   T   +W+    ++L+  
Sbjct: 230 EGYDNYPGQEKTDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATV 289

Query: 368 TAQPPANYFQKMILWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLEDWCPKKGPI 189
             QP  N F+++I WT +GK+W+FPI+NE G +++    F EHIFL+ HLE + PK+GPI
Sbjct: 290 NEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGS-EFHEHIFLEKHLESF-PKQGPI 347

Query: 188 RHFMELVCVGLSKNPFYTAQEKKEHIMWYKDYFVTKKDLLTE 63
           RHFMELV  GLSKNP+ + ++K EHI W+++YF  KKD+L E
Sbjct: 348 RHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKE 389


>AL161614-1|CAH72771.1|  395|Homo sapiens mitochondrial ribosomal
           protein S31 protein.
          Length = 395

 Score =  141 bits (341), Expect = 3e-33
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)
 Frame = -2

Query: 713 TTLSDLLVGMKVDRTVEPDEVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPND 534
           TT S+LL   ++ +  E    Q+     +     ++S  K   ++  R   R    +  D
Sbjct: 172 TTKSELL--SQLQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFD 229

Query: 533 RTRQGRDSNRSGTPQITEIDIFGGEPLGIFK----TTE-PNYGTKLDVWENLKKRELSLA 369
                              +IF G+ L IF     T E P   T   +W+    ++L+  
Sbjct: 230 EGYDNYPGQEKTDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATV 289

Query: 368 TAQPPANYFQKMILWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLEDWCPKKGPI 189
             QP  N F+++I WT +GK+W+FPI+NE G +++    F EHIFL+ HLE + PK+GPI
Sbjct: 290 NEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGS-EFHEHIFLEKHLESF-PKQGPI 347

Query: 188 RHFMELVCVGLSKNPFYTAQEKKEHIMWYKDYFVTKKDLLTE 63
           RHFMELV  GLSKNP+ + ++K EHI W+++YF  KKD+L E
Sbjct: 348 RHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKE 389


>Z68747-1|CAA92951.1|  395|Homo sapiens imogen 38 protein.
          Length = 395

 Score =  140 bits (339), Expect = 5e-33
 Identities = 79/222 (35%), Positives = 117/222 (52%), Gaps = 5/222 (2%)
 Frame = -2

Query: 713 TTLSDLLVGMKVDRTVEPDEVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPND 534
           TT S+LL   ++ +  E    Q+     +     ++S  K   ++  R   R    +  D
Sbjct: 172 TTKSELL--SQLQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFD 229

Query: 533 RTRQGRDSNRSGTPQITEIDIFGGEPLGIFK----TTE-PNYGTKLDVWENLKKRELSLA 369
                              +IF G+ L IF     T E P   T   +W     ++L+  
Sbjct: 230 EGYDNYPGQEKTDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWNVEFAKQLATV 289

Query: 368 TAQPPANYFQKMILWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLEDWCPKKGPI 189
             QP  N F+++I WT +GK+W+FPI+NE G +++    F EHIFL+ HLE + PK+GPI
Sbjct: 290 NEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGS-EFHEHIFLEKHLESF-PKQGPI 347

Query: 188 RHFMELVCVGLSKNPFYTAQEKKEHIMWYKDYFVTKKDLLTE 63
           RHFMELV  GLSKNP+ + ++K EHI W+++YF  KKD+L E
Sbjct: 348 RHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKE 389


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,994,612
Number of Sequences: 237096
Number of extensions: 2528026
Number of successful extensions: 14194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14186
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)