Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_C12
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 31 0.65
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 31 0.65
AF003136-4|AAK93853.2| 368|Caenorhabditis elegans Acyltransfera... 31 1.1
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 30 1.5
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 30 1.5
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 30 2.0
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 29 4.6
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 29 4.6
AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacti... 29 4.6
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 29 4.6
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 29 4.6
Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68341-2|CAA92765.2| 649|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 455 LGIFKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKMILWT 321
+GIF T P Y + ++ +NLK+ SLA QP +++L++
Sbjct: 1962 IGIFITMNPGYSGRSNLPDNLKQLFRSLAMTQPDRQLIAQVMLFS 2006
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 455 LGIFKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKMILWT 321
+GIF T P Y + ++ +NLK+ SLA QP +++L++
Sbjct: 1962 IGIFITMNPGYSGRSNLPDNLKQLFRSLAMTQPDRQLIAQVMLFS 2006
>AF003136-4|AAK93853.2| 368|Caenorhabditis elegans
Acyltransferase-like protein 11 protein.
Length = 368
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 102 VPHDVFFFLLGGVKWIL*EPDADQLHEVAYRSFLRAPVF 218
VP ++GGV WI+ A QL + Y+S++R +F
Sbjct: 26 VPFASCAIVIGGVSWIVPRHVAQQLDNMLYKSYMRLCLF 64
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = -2
Query: 509 NRSGTPQITEIDIFGGEPLGIFKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKMI 330
N S P + + FG + + E N + +VW +K + LA PA Y
Sbjct: 80 NVSSPPVVVD---FGVAMILLINVDEKNQILQTNVWLTMKWNDFQLAWN--PAEYGNISN 134
Query: 329 LWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLE-DWCP 204
L +VW I + ++ F ++F+D H + W P
Sbjct: 135 LHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVP 177
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = -2
Query: 509 NRSGTPQITEIDIFGGEPLGIFKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKMI 330
N S P + + FG + + E N + +VW +K + LA PA Y
Sbjct: 80 NVSSPPVVVD---FGVAMILLINVDEKNQILQTNVWLTMKWNDFQLAWN--PAEYGNISN 134
Query: 329 LWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLE-DWCP 204
L +VW I + ++ F ++F+D H + W P
Sbjct: 135 LHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVP 177
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 586 SVVFALLTSLFTCCSLVSGFCWTSSGSTVLSTFIPT 693
+++F + FT +++ FCWTS+ + LS IPT
Sbjct: 153 AIMFLYFDTDFTGGAIMIFFCWTSTSANRLSVNIPT 188
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 728 INQTSTTLSDLLVGMKVDRTVEPDEVQQKPDTREQQVKRLVSKAKTTEASPTRY 567
+NQ ++ S L + + E D +QQKP EQ+V K+ + S +Y
Sbjct: 81 LNQFASMQSQLDIVKRRQDAYERDLIQQKPSVPEQKVGESSKKSPRSAESALKY 134
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 665 EPDEVQQKPDTREQ-QVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGTPQ 489
E +++Q+ PD EQ + KR+ +AK EA+ TRY++ TR+ ++
Sbjct: 198 ETNDIQEDPDITEQLREKRM--RAKWAEAARTRYARMTPEERRAHNTRRRMRQMQNAMSA 255
Query: 488 ITEIDIFGGEP 456
I + G+P
Sbjct: 256 IKACGMATGDP 266
>AF100304-3|AAP82634.1| 542|Caenorhabditis elegans Gex interacting
protein protein4, isoform c protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 665 EPDEVQQKPDTREQ-QVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGTPQ 489
E +++Q+ PD EQ + KR+ +AK EA+ TRY++ TR+ ++
Sbjct: 198 ETNDIQEDPDITEQLREKRM--RAKWAEAARTRYARMTPEERRAHNTRRRMRQMQNAMSA 255
Query: 488 ITEIDIFGGEP 456
I + G+P
Sbjct: 256 IKACGMATGDP 266
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 665 EPDEVQQKPDTREQ-QVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGTPQ 489
E +++Q+ PD EQ + KR+ +AK EA+ TRY++ TR+ ++
Sbjct: 194 ETNDIQEDPDITEQLREKRM--RAKWAEAARTRYARMTPEERRAHNTRRRMRQMQNAMSA 251
Query: 488 ITEIDIFGGEP 456
I + G+P
Sbjct: 252 IKACGMATGDP 262
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 665 EPDEVQQKPDTREQ-QVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGTPQ 489
E +++Q+ PD EQ + KR+ +AK EA+ TRY++ TR+ ++
Sbjct: 175 ETNDIQEDPDITEQLREKRM--RAKWAEAARTRYARMTPEERRAHNTRRRMRQMQNAMSA 232
Query: 488 ITEIDIFGGEP 456
I + G+P
Sbjct: 233 IKACGMATGDP 243
>Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 308 LYPDWSTGSFSGNNWPEAVQLLNLALVSLGSPKHPVLFHSL 430
LY + TG+ +NW Q L+ + + S +P+L+ L
Sbjct: 321 LYTSFQTGTICNSNWTMIFQPLSYIFLFISSAINPILYACL 361
>Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 308 LYPDWSTGSFSGNNWPEAVQLLNLALVSLGSPKHPVLFHSL 430
LY + TG+ +NW Q L+ + + S +P+L+ L
Sbjct: 321 LYTSFQTGTICNSNWTMIFQPLSYIFLFISSAINPILYACL 361
>Z68341-2|CAA92765.2| 649|Caenorhabditis elegans Hypothetical
protein F01G4.4 protein.
Length = 649
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 104 YKDYFVTKKDLLTEVGAWXRPNSNKEAS 21
YK F KD+ T+VGAW N K S
Sbjct: 29 YKYLFGKVKDIFTDVGAWVEYNVEKVQS 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,443
Number of Sequences: 27780
Number of extensions: 399577
Number of successful extensions: 1268
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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