Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_C12
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 270 RGTKDTFLRAHIFGHTSRRLVPEERTDTPLHGAGLRRALKESILHR 133
           RGT +  +  +I       L+  E    P HG G    +K +IL R
Sbjct: 26  RGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIR 71


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 311 YPDWSTGSFSGNNWPEAVQLLNLALVSLGSPKHPVLFHSL 430
           YP + T +  G+ +     +L LAL  + +    + FHSL
Sbjct: 229 YPPYGTFNIKGDTFDLMDGILGLALGPIRNNDRILYFHSL 268


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 206 PKKGPIRHFMELVCVGLSKNPFYTAQEKKE 117
           P K P     ++ CV  S  P  T   +KE
Sbjct: 376 PSKNPAMGHWQMSCVACSPPPRQTPPSRKE 405


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 550 ADFRCEYLVGEASVVFALLTSLFTCCSLVSGFCWT 654
           +D +    VG    VF +    F C ++V+ +C T
Sbjct: 266 SDHKAAITVGVIMGVFLICWVPFFCVNIVTSYCKT 300


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 175  SWSASGSQRIHFTPPRRKKN 116
            +WS  G   I+F    +KKN
Sbjct: 1483 AWSDGGCPMIYFVVEHKKKN 1502


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 476 DIFGGEPLGIFKTTEPNY 423
           +I  GEPL +F  + PN+
Sbjct: 941 EISDGEPLYVFVRSAPNF 958


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 545 VPNDRTRQGRDSNRSGTPQIT 483
           +P   T    D+NR G+P++T
Sbjct: 90  IPATLTYISLDTNRGGSPKLT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,629
Number of Sequences: 438
Number of extensions: 5033
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)